Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DQM60_RS02160 Genome accession   NZ_LS483366
Coordinates   404245..404688 (+) Length   147 a.a.
NCBI ID   WP_002885568.1    Uniprot ID   A0A0A1DW04
Organism   Streptococcus salivarius strain NCTC7366     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 399245..409688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS02145 (NCTC7366_00432) gdhA 400317..401669 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  DQM60_RS02150 (NCTC7366_00433) - 402157..403491 (+) 1335 WP_231910686.1 YfhO family protein -
  DQM60_RS02155 (NCTC7366_00434) - 403649..404059 (+) 411 WP_014633541.1 peptide deformylase -
  DQM60_RS02160 (NCTC7366_00435) rcrR 404245..404688 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM60_RS02165 (NCTC7366_00436) rcrP 404692..406506 (+) 1815 WP_084871161.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS02170 (NCTC7366_00437) rcrQ 406496..408274 (+) 1779 WP_049529161.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS02175 (NCTC7366_00438) - 408382..409005 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17181.67 Da        Isoelectric Point: 9.3639

>NTDB_id=1138763 DQM60_RS02160 WP_002885568.1 404245..404688(+) (rcrR) [Streptococcus salivarius strain NCTC7366]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKHFREAIHEQLLEGISKEDAETAFRVFHQIRMNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1138763 DQM60_RS02160 WP_002885568.1 404245..404688(+) (rcrR) [Streptococcus salivarius strain NCTC7366]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCACAAGGATTTGCCGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAAGCTCGAGA
TGTCAAACATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAACAGCCTTTCGTG
TCTTTCACCAAATTCGTATGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1DW04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558

Multiple sequence alignment