Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   DQM60_RS02165 Genome accession   NZ_LS483366
Coordinates   404692..406506 (+) Length   604 a.a.
NCBI ID   WP_084871161.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 399692..411506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS02145 (NCTC7366_00432) gdhA 400317..401669 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  DQM60_RS02150 (NCTC7366_00433) - 402157..403491 (+) 1335 WP_231910686.1 YfhO family protein -
  DQM60_RS02155 (NCTC7366_00434) - 403649..404059 (+) 411 WP_014633541.1 peptide deformylase -
  DQM60_RS02160 (NCTC7366_00435) rcrR 404245..404688 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM60_RS02165 (NCTC7366_00436) rcrP 404692..406506 (+) 1815 WP_084871161.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS02170 (NCTC7366_00437) rcrQ 406496..408274 (+) 1779 WP_049529161.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS02175 (NCTC7366_00438) - 408382..409005 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -
  DQM60_RS02180 (NCTC7366_00439) - 409153..409776 (+) 624 WP_049529160.1 GTP pyrophosphokinase family protein -
  DQM60_RS02185 (NCTC7366_00440) - 409778..410455 (+) 678 WP_084871162.1 response regulator transcription factor -

Sequence


Protein


Download         Length: 604 a.a.        Molecular weight: 67030.81 Da        Isoelectric Point: 6.5195

>NTDB_id=1138764 DQM60_RS02165 WP_084871161.1 404692..406506(+) (rcrP) [Streptococcus salivarius strain NCTC7366]
MFKIFKRLTTKELIMIVLVVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQLVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSLALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKIHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSKKPKEVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1138764 DQM60_RS02165 WP_084871161.1 404692..406506(+) (rcrP) [Streptococcus salivarius strain NCTC7366]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAATCATGATTGTCTTAGTGGTGATTTTTGTTTGCTTGAACGT
CTATTTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAAGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCTTCTGTAGTTGTT
GGTTTCTTAGCTGCCAGAACAGCGGCAAGTTTTACCACCCGTCTTCGTGATGATATCTTCCATCAGGTTCTAGATTTTTC
GGATGCTGAGATTAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGCTGGTAC
TTACCATGGGGTTACAGGTTATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGG
AACTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACTGGAATTCGTGTGGTGCGTG
CCTATAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATCGGT
CGTTCTTTGGCCTTACTGACACCGGTAATGACTGCTGTATCAAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCACA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAATAAGATCCATCTTTTCTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTATCCTGAAAATAGTTCTAA
AAAACCTAAAGAAGTGGGTACTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACAATCAAGGTTGACGGAGTAGATGTGCGACATTACGACCATGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCTGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAGTCCCCTTGATGATGCTAAGATTTGGGAAGCCCTTGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAGCAACGTTTGGCTATTGC
GCGTGCCTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGACTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCCCAACGTATCTCTACTATTATGGATGCG
GACCAAATCTTGGTACTTGACCAAGGTAAGGTCGTTGGTCAAGGGACTCACAAGGAACTCTTGGCAAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.43

100

0.685


Multiple sequence alignment