Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM60_RS02170 Genome accession   NZ_LS483366
Coordinates   406496..408274 (+) Length   592 a.a.
NCBI ID   WP_049529161.1    Uniprot ID   A0AAW7PJZ4
Organism   Streptococcus salivarius strain NCTC7366     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 401496..413274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS02150 (NCTC7366_00433) - 402157..403491 (+) 1335 WP_231910686.1 YfhO family protein -
  DQM60_RS02155 (NCTC7366_00434) - 403649..404059 (+) 411 WP_014633541.1 peptide deformylase -
  DQM60_RS02160 (NCTC7366_00435) rcrR 404245..404688 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM60_RS02165 (NCTC7366_00436) rcrP 404692..406506 (+) 1815 WP_084871161.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS02170 (NCTC7366_00437) rcrQ 406496..408274 (+) 1779 WP_049529161.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS02175 (NCTC7366_00438) - 408382..409005 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -
  DQM60_RS02180 (NCTC7366_00439) - 409153..409776 (+) 624 WP_049529160.1 GTP pyrophosphokinase family protein -
  DQM60_RS02185 (NCTC7366_00440) - 409778..410455 (+) 678 WP_084871162.1 response regulator transcription factor -
  DQM60_RS02190 (NCTC7366_00441) - 410469..411692 (+) 1224 WP_049529158.1 sensor histidine kinase -
  DQM60_RS02195 (NCTC7366_00442) pyrH 411928..412665 (+) 738 WP_002885551.1 UMP kinase -
  DQM60_RS02200 (NCTC7366_00443) frr 412680..413237 (+) 558 WP_002886708.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65142.15 Da        Isoelectric Point: 5.0198

>NTDB_id=1138765 DQM60_RS02170 WP_049529161.1 406496..408274(+) (rcrQ) [Streptococcus salivarius strain NCTC7366]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGILTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1138765 DQM60_RS02170 WP_049529161.1 406496..408274(+) (rcrQ) [Streptococcus salivarius strain NCTC7366]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGGATTACACCTACTAAAATGGGGACAATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTTGGTTACTTACAAAGCTTTACGGTTGCGACAGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAATAGTGTTCCTCTTAATTATTTTGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAAGGTTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTCATCATGGGCTTCTCGCAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACGGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAAAGCAGTCAAGCTTTCAAGGGA
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTTATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTATCTTGACGATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCCCAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCCC
TTGCTAAGCCAGGTCAAAAGATTGCGATCGTTGGTCCAACAGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATTACCATTGACGGTGTGGATACTAATGACATGAAACGTGAAACCGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCTAAGGCTGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGGTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGACGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCAGTTGACACCCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATTCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.088

100

0.691

Multiple sequence alignment