Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM55_RS06510 Genome accession   NZ_LS483364
Coordinates   1260995..1262956 (-) Length   653 a.a.
NCBI ID   WP_111675879.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255995..1267956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS06485 (NCTC11086_01342) proB 1256417..1257526 (-) 1110 WP_111675876.1 glutamate 5-kinase -
  DQM55_RS06490 (NCTC11086_01343) - 1257647..1258537 (-) 891 WP_111675877.1 RluA family pseudouridine synthase -
  DQM55_RS06495 (NCTC11086_01344) lspA 1258521..1258988 (-) 468 WP_111675878.1 signal peptidase II -
  DQM55_RS06500 (NCTC11086_01345) - 1258992..1259894 (-) 903 WP_032908183.1 LysR family transcriptional regulator -
  DQM55_RS06505 (NCTC11086_01346) - 1260014..1260871 (-) 858 WP_004191420.1 GNAT family N-acetyltransferase -
  DQM55_RS06510 (NCTC11086_01347) amiA 1260995..1262956 (-) 1962 WP_111675879.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS06515 (NCTC11086_01348) - 1263242..1266040 (-) 2799 WP_172454736.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  DQM55_RS06520 (NCTC11086_01349) - 1266277..1267017 (+) 741 WP_111675881.1 hypothetical protein -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72429.05 Da        Isoelectric Point: 4.6054

>NTDB_id=1138671 DQM55_RS06510 WP_111675879.1 1260995..1262956(-) (amiA) [Streptococcus sanguinis strain NCTC11086]
MKASKWLIATGIALSAGLLLTACSQSSSSTNNYTYVYSSDPDSLNYLATNRATTGDVISNLVDGLFENDKYGNLVPSIAK
SWTVSKDGLTYTYKLRDDAKWYTSDGEEYAEVKAQDFVTGLKYAADENSEAIYLVQDSVKGLDAYIKGEDKNFDNVGVKA
IDDHTLQYTLARPEPYWNSKTTSTILFPVNEEFLKAEGSNFGSVKPSSILYNGPYLLKSLTSKSVMEFVKNQNYYDKDNV
TLDSIKLTYYDGNDQEALIRNFSDGVYSTARLYPNSSGFASVKKKYADNIVYSPQDSTSYYYNFNYNRQSYNHTSKTTDA
QKSATNEAIMNKDFRQAINFAFDRTSYGAQGNGEDGATKVLRNTLVPPSFVQIGDKDFGTVVGEKLVNYGNQWQGIDLSD
AQDPYYNPEKAKAKFAEAKQALQAKGVEFPIHLDMPVDQSSTIGVQWASSTKQSIESALGAENVVIDLQKMSTDDLNNIT
YFANSAAQKDYDMSTGGWTGDYQDPSTYLDTLNIKNGGSLQNFGFEPGQDNDKIKELGLDTYTKMLEEANAETNDVQLRY
EKYAEAEAWLLDSGLIIPTVSQGATPSVTKSVPFTKAYSPVGVKGSAYNFKLTQLQKDVVTTKEYEAAKKKWKEEATAAN
KKAQEELADHVEK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1138671 DQM55_RS06510 WP_111675879.1 1260995..1262956(-) (amiA) [Streptococcus sanguinis strain NCTC11086]
ATGAAAGCATCAAAGTGGTTGATTGCGACTGGAATTGCACTGAGTGCCGGGCTATTGCTAACGGCTTGTAGCCAGTCTTC
ATCTAGCACAAATAATTATACTTACGTTTATAGTTCAGACCCTGACAGCTTGAACTATCTTGCTACAAACCGTGCAACGA
CAGGTGATGTCATTTCCAATTTGGTCGATGGACTTTTTGAAAATGACAAGTACGGGAATCTAGTTCCCTCAATCGCCAAG
TCATGGACAGTTTCTAAGGACGGTTTGACATATACTTATAAGCTGCGTGATGATGCTAAATGGTACACATCCGATGGTGA
AGAATATGCAGAAGTAAAAGCTCAGGACTTTGTGACTGGCTTGAAGTATGCAGCGGATGAAAATTCTGAAGCTATTTATC
TAGTTCAGGACTCTGTGAAGGGCTTGGATGCTTATATCAAGGGTGAAGATAAGAATTTTGACAATGTTGGTGTCAAAGCT
ATTGATGACCATACCCTGCAATACACTCTGGCTCGCCCTGAGCCATATTGGAACTCTAAAACGACCAGCACGATTCTTTT
CCCAGTCAATGAAGAGTTTCTGAAAGCAGAAGGAAGCAATTTTGGCTCTGTCAAGCCATCTAGCATCCTCTACAATGGTC
CTTACTTGCTCAAGTCGCTGACTTCCAAGTCTGTGATGGAATTTGTCAAGAACCAAAACTACTACGATAAAGATAATGTG
ACTCTAGATAGCATCAAGCTAACCTATTATGATGGAAATGATCAGGAAGCGTTGATTCGTAACTTTAGCGATGGCGTTTA
TAGCACAGCTCGTCTCTATCCAAATAGCTCAGGCTTTGCTTCAGTCAAGAAGAAATACGCGGACAATATCGTTTACAGCC
CGCAGGATTCTACTTCTTATTACTATAATTTTAACTACAACCGTCAGTCTTACAATCATACTTCTAAAACAACAGACGCT
CAAAAATCTGCGACCAACGAAGCAATCATGAACAAGGACTTCCGTCAGGCTATTAACTTTGCCTTTGACCGTACATCTTA
TGGTGCGCAAGGAAATGGTGAAGACGGAGCGACTAAGGTCTTGAGAAATACATTGGTACCACCTAGCTTTGTCCAAATTG
GCGACAAGGATTTTGGAACTGTTGTTGGAGAAAAATTAGTCAACTATGGCAACCAATGGCAAGGAATTGACCTCTCTGAC
GCTCAAGATCCTTACTACAATCCTGAAAAAGCTAAGGCGAAATTTGCAGAAGCGAAGCAAGCCTTGCAGGCTAAGGGAGT
TGAATTCCCAATTCACTTAGATATGCCTGTGGATCAGTCTAGCACCATTGGCGTTCAATGGGCTAGCTCAACCAAGCAGT
CTATCGAATCGGCTCTTGGAGCGGAAAATGTCGTCATTGACCTGCAAAAGATGAGCACAGACGATCTTAATAACATCACC
TATTTTGCTAACTCTGCTGCTCAGAAAGACTATGATATGTCTACTGGTGGTTGGACTGGTGACTACCAAGACCCATCTAC
CTATCTTGATACTCTCAATATCAAGAACGGCGGAAGCTTGCAAAACTTTGGTTTTGAGCCAGGTCAAGACAATGATAAGA
TTAAAGAGCTAGGCTTGGATACTTATACCAAGATGCTGGAAGAAGCCAATGCTGAAACCAACGATGTGCAGCTGCGTTAC
GAAAAGTATGCAGAAGCGGAAGCTTGGTTGCTAGATAGCGGCTTGATTATTCCGACTGTTTCACAAGGAGCAACACCGTC
TGTTACTAAATCAGTGCCATTTACGAAGGCCTACTCACCAGTTGGTGTCAAAGGTTCAGCTTACAACTTCAAGCTGACCC
AGCTTCAGAAGGATGTTGTAACGACCAAAGAATACGAAGCAGCTAAGAAAAAATGGAAAGAAGAAGCTACTGCGGCAAAT
AAAAAAGCCCAGGAAGAACTTGCTGACCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.488

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.099

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.947

100

0.553

Multiple sequence alignment