Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM55_RS04160 Genome accession   NZ_LS483364
Coordinates   791136..791936 (+) Length   266 a.a.
NCBI ID   WP_111675564.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 786136..796936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS04135 (NCTC11086_00817) - 786461..787141 (-) 681 WP_111675561.1 amino acid ABC transporter permease -
  DQM55_RS04140 (NCTC11086_00818) - 787154..787966 (-) 813 WP_111675562.1 transporter substrate-binding domain-containing protein -
  DQM55_RS04145 (NCTC11086_00819) - 787981..788742 (-) 762 WP_111675563.1 amino acid ABC transporter ATP-binding protein -
  DQM55_RS04150 (NCTC11086_00820) micA 789083..789784 (+) 702 WP_002894937.1 response regulator YycF Regulator
  DQM55_RS04155 (NCTC11086_00821) micB 789777..791126 (+) 1350 WP_002899938.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM55_RS04160 (NCTC11086_00822) vicX 791136..791936 (+) 801 WP_111675564.1 MBL fold metallo-hydrolase Regulator
  DQM55_RS04165 (NCTC11086_00823) - 792028..792387 (+) 360 WP_002894940.1 DUF454 family protein -
  DQM55_RS04170 (NCTC11086_00824) rnc 792509..793207 (+) 699 WP_111675565.1 ribonuclease III -
  DQM55_RS04175 (NCTC11086_00825) smc 793198..796734 (+) 3537 WP_111675566.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29706.63 Da        Isoelectric Point: 6.2240

>NTDB_id=1138667 DQM55_RS04160 WP_111675564.1 791136..791936(+) (vicX) [Streptococcus sanguinis strain NCTC11086]
MTKGFQYSILASGSSGNCFYLETDQKRILVDAGLSGKKITSLLSEIGRKPEDLDAILVTHEHKDHIHGVGVLARKYHLDI
YANEATWKAMEKDLGKLNASQKHIFELGKTKTFGDLDVESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIIE
NADGYLIESNHDIEILRSGAYPWSLKQRILSDMGHLSNEDGAETMIRTLGNRTKRIYLGHLSKENNIKELAHMTMVNQLA
QADMAVGHDFQVYDTSPDTATPLTSI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1138667 DQM55_RS04160 WP_111675564.1 791136..791936(+) (vicX) [Streptococcus sanguinis strain NCTC11086]
ATGACTAAAGGATTTCAATACAGTATTTTGGCGTCAGGATCAAGCGGTAATTGTTTCTATCTGGAAACAGACCAAAAGCG
GATTCTGGTTGACGCTGGCTTATCAGGCAAGAAAATTACGAGCTTGCTGAGCGAAATTGGCCGCAAGCCTGAGGATTTGG
ATGCCATTTTAGTGACTCATGAGCACAAGGACCACATTCATGGCGTTGGAGTGTTGGCCCGCAAGTATCATCTGGATATT
TATGCTAATGAGGCCACTTGGAAGGCTATGGAAAAGGATTTGGGCAAGCTGAATGCTAGTCAAAAGCATATCTTTGAATT
GGGCAAGACCAAGACCTTTGGAGACTTGGATGTGGAGAGCTTTGGTGTCAGTCATGACGCAGCCTGTCCACAATTTTACC
GCTTCATGAAGGATGACAAAAGCTTTGTCATGCTGACGGATACGGGCTATGTCAGTGACCGGATGGCTGGGATTATCGAA
AATGCTGACGGGTACTTGATTGAGAGCAACCATGATATTGAAATTCTTCGCAGCGGTGCCTATCCTTGGAGTCTCAAGCA
GCGAATTCTGTCGGATATGGGTCACTTGTCTAATGAAGACGGAGCGGAGACCATGATTCGGACTCTGGGCAATCGCACCA
AGCGAATCTATCTAGGACATCTCAGTAAGGAAAATAATATCAAAGAATTGGCCCACATGACCATGGTCAATCAGCTGGCT
CAAGCCGATATGGCAGTCGGTCACGACTTCCAAGTCTATGATACCTCGCCTGATACCGCAACGCCTTTGACGAGTATTTA
G

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(27-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

80.989

98.872

0.801

Multiple sequence alignment