Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   DQM53_RS03320 Genome accession   NZ_LS483361
Coordinates   597225..598226 (+) Length   333 a.a.
NCBI ID   WP_003049927.1    Uniprot ID   A0A9X5LWR8
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 592225..603226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS03295 (NCTC6179_00669) - 592276..593202 (-) 927 WP_111715650.1 glycosyltransferase family 2 protein -
  DQM53_RS03300 (NCTC6179_00670) - 593339..594523 (-) 1185 WP_111715653.1 DNA/RNA non-specific endonuclease -
  DQM53_RS03305 (NCTC6179_00671) - 594869..595246 (-) 378 WP_003049924.1 VOC family protein -
  DQM53_RS03310 (NCTC6179_00672) - 595257..595922 (-) 666 WP_111715656.1 NAD(P)H-dependent oxidoreductase -
  DQM53_RS03315 (NCTC6179_00673) - 595966..597051 (-) 1086 WP_111717901.1 Xaa-Pro peptidase family protein -
  DQM53_RS03320 (NCTC6179_00674) ccpA 597225..598226 (+) 1002 WP_003049927.1 catabolite control protein A Regulator
  DQM53_RS03325 (NCTC6179_00675) - 598381..599844 (+) 1464 WP_111715658.1 alpha-amylase -
  DQM53_RS03330 (NCTC6179_00676) - 599921..600919 (+) 999 WP_111715661.1 glycosyltransferase -
  DQM53_RS03335 (NCTC6179_00677) - 600921..602255 (+) 1335 WP_111715663.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36683.74 Da        Isoelectric Point: 5.7248

>NTDB_id=1138517 DQM53_RS03320 WP_003049927.1 597225..598226(+) (ccpA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLDHQLPS
VNIDYKAAVSNVVDILAENHQSIAFVSGPLIDDINGKVRLAGYKEGLKHNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1138517 DQM53_RS03320 WP_003049927.1 597225..598226(+) (ccpA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGAATACAGATGATACCATCACGATTTATGACGTTGCCCGTGAAGCTGGTGTTTCTATGGCAACTGTTAGTCGTGTTGT
TAATGGCAACAAAAACGTTAAGGAAAACACGCGTAAGAAAGTTTTAGAAGTCATTGACCGCCTAGATTATCGTCCAAATG
CTGTCGCACGTGGTCTCGCCAGCAAAAAAACAACAACCGTCGGGGTTGTGATTCCGAATATTGCAAACAGTTATTTTTCT
ATTTTAGCCAAAGGTATTGATGATATCGCCGCTATGTATAAATATAATATTGTACTTGCCTCTAGTGATGAGGATGATGA
CAAGGAGGTTAACGTTGTTAATACCCTCTTTGCTAAGCAAGTTGACGGTATTATCTTTATGGGGCACCATTTGACTGAAA
AAATCCGTGCGGAATTTTCACGCTCACGCACCCCGATTGTTTTAGCAGGGACAGTTGACCTTGATCATCAATTACCAAGT
GTTAATATTGACTATAAGGCTGCTGTGTCTAATGTGGTTGATATTTTGGCAGAAAACCATCAGAGCATTGCCTTTGTGTC
AGGACCACTTATTGATGACATCAATGGTAAAGTACGTTTGGCGGGTTACAAAGAAGGCTTGAAGCACAACAAACTTGACT
TCAAAGAAGGACTTGTTTTTGAAGCTAATTATTCTTATAAAGAAGGCTTTGAATTGGCACAACGTGTGATTAACTCAGGA
GCAACAGCAGCTTATGTGGCTGAAGATGAGTTAGCAGCGGGTCTTTTAAATGGTTTGTTTGAAGCAGGCAAACGCGTTCC
AGAAGATTTTGAAATCATCACCAGCAATGATTCACCAGTTGTTCAATATACCCGTCCAAACTTGAGTTCTATCAGCCAAC
CCGTTTACGACTTGGGAGCTGTCAGCATGCGGATGTTGACTAAGATCATGAACAAAGAAGAGTTGGAAGAAAAAGAAATT
CTTTTGAATCATGGCATTAAAAAACGCGGAACCACTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778

  ccpA Streptococcus pneumoniae D39

75.976

100

0.76

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment