Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DQM59_RS05070 Genome accession   NZ_LS483349
Coordinates   973761..974450 (+) Length   229 a.a.
NCBI ID   WP_002266795.1    Uniprot ID   A0A829BLY4
Organism   Streptococcus mutans strain NCTC10449     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 968761..979450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM59_RS05040 (NCTC10449_00974) - 969489..969722 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  DQM59_RS05045 (NCTC10449_00975) - 969722..971086 (+) 1365 WP_002280145.1 DUF438 domain-containing protein -
  DQM59_RS05050 (NCTC10449_00976) - 971213..971941 (-) 729 WP_002280146.1 ABC transporter permease -
  DQM59_RS05055 (NCTC10449_00977) - 971938..972678 (-) 741 WP_002280147.1 ABC transporter permease -
  DQM59_RS05060 (NCTC10449_00978) - 972678..973586 (-) 909 WP_002280148.1 ABC transporter ATP-binding protein -
  DQM59_RS05070 (NCTC10449_00979) scnR 973761..974450 (+) 690 WP_002266795.1 response regulator transcription factor Regulator
  DQM59_RS05075 (NCTC10449_00980) scnK 974451..975758 (+) 1308 WP_002280149.1 sensor histidine kinase Regulator
  DQM59_RS05080 (NCTC10449_00981) truB 975851..976732 (+) 882 WP_002280150.1 tRNA pseudouridine(55) synthase TruB -
  DQM59_RS05085 (NCTC10449_00982) - 976763..977683 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  DQM59_RS05090 (NCTC10449_00983) spx 977744..978157 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  DQM59_RS05095 (NCTC10449_00984) - 978150..978428 (+) 279 WP_002265496.1 UPF0223 family protein -
  DQM59_RS05100 (NCTC10449_00985) - 978418..979176 (+) 759 WP_002262204.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26291.64 Da        Isoelectric Point: 6.9650

>NTDB_id=1137885 DQM59_RS05070 WP_002266795.1 973761..974450(+) (scnR) [Streptococcus mutans strain NCTC10449]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1137885 DQM59_RS05070 WP_002266795.1 973761..974450(+) (scnR) [Streptococcus mutans strain NCTC10449]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGATAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829BLY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.127

100

0.991
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367

Multiple sequence alignment