Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE2   Type   Regulator
Locus tag   DQM48_RS10545 Genome accession   NZ_LS483348
Coordinates   1746184..1746411 (-) Length   75 a.a.
NCBI ID   WP_228380495.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1741184..1751411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS08920 (NCTC8738_01887) rmuC 1741918..1743192 (-) 1275 WP_020917485.1 DNA recombination protein RmuC -
  DQM48_RS08925 (NCTC8738_01888) - 1743194..1743826 (-) 633 WP_020917486.1 thiamine diphosphokinase -
  DQM48_RS08930 (NCTC8738_01889) rpe 1743819..1744481 (-) 663 WP_020917487.1 ribulose-phosphate 3-epimerase -
  DQM48_RS08935 (NCTC8738_01890) rsgA 1744488..1745360 (-) 873 WP_058814253.1 ribosome small subunit-dependent GTPase A -
  DQM48_RS08945 (NCTC8738_01892) comE/comE2 1745678..1746199 (-) 522 WP_228380494.1 LytR/AlgR family response regulator transcription factor Regulator
  DQM48_RS10545 (NCTC8738_01893) comE/comE2 1746184..1746411 (-) 228 WP_228380495.1 hypothetical protein Regulator
  DQM48_RS08950 (NCTC8738_01894) comD/comD2 1746969..1747781 (-) 813 WP_172454536.1 sensor histidine kinase Regulator
  DQM48_RS08955 (NCTC8738_01896) - 1748698..1748991 (-) 294 WP_020917489.1 bacteriocin immunity protein -
  DQM48_RS08960 (NCTC8738_01897) - 1749019..1749324 (-) 306 WP_020917490.1 bacteriocin immunity protein -
  DQM48_RS08965 - 1749337..1749486 (-) 150 WP_020917491.1 hypothetical protein -
  DQM48_RS08970 (NCTC8738_01898) rsmA 1749893..1750765 (-) 873 WP_111699071.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 9274.79 Da        Isoelectric Point: 4.2694

>NTDB_id=1137849 DQM48_RS10545 WP_228380495.1 1746184..1746411(-) (comE/comE2) [Streptococcus lutetiensis strain NCTC8738]
MIDIYVLENNVNQQFRIEKMIGDLLETNQWETRHFDLFSEPDCLINLVEEPFPQFFSWILIFMEIIPKELKWLRR

Nucleotide


Download         Length: 228 bp        

>NTDB_id=1137849 DQM48_RS10545 WP_228380495.1 1746184..1746411(-) (comE/comE2) [Streptococcus lutetiensis strain NCTC8738]
ATGATTGATATCTATGTATTAGAAAATAATGTAAATCAGCAGTTTCGTATTGAGAAAATGATTGGAGATTTGCTGGAGAC
AAATCAGTGGGAAACTCGTCATTTTGATTTATTTAGTGAACCTGATTGTTTAATTAACCTAGTTGAGGAGCCTTTTCCTC
AATTTTTTTCCTGGATATTGATATTCATGGAGATAATACCAAAGGAATTGAAGTGGCTAAGGCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE2 Streptococcus equinus JB1

92.857

74.667

0.693

Multiple sequence alignment