Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM48_RS08580 Genome accession   NZ_LS483348
Coordinates   1673031..1673537 (-) Length   168 a.a.
NCBI ID   WP_020917424.1    Uniprot ID   A0AB33ANQ2
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1668031..1678537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS08550 (NCTC8738_01806) - 1669490..1670434 (+) 945 WP_020917419.1 magnesium transporter CorA family protein -
  DQM48_RS08555 (NCTC8738_01807) - 1670708..1671364 (+) 657 WP_111699051.1 DUF1129 domain-containing protein -
  DQM48_RS08560 (NCTC8738_01808) - 1671405..1671626 (-) 222 WP_111699053.1 hypothetical protein -
  DQM48_RS08565 (NCTC8738_01810) - 1671833..1672057 (-) 225 WP_043895293.1 helix-turn-helix domain-containing protein -
  DQM48_RS10530 (NCTC8738_01811) - 1672059..1672385 (-) 327 WP_231872448.1 hypothetical protein -
  DQM48_RS10535 (NCTC8738_01812) - 1672407..1672583 (-) 177 WP_231853221.1 hypothetical protein -
  DQM48_RS08575 (NCTC8738_01813) rpsR 1672731..1672970 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQM48_RS08580 (NCTC8738_01814) ssbA 1673031..1673537 (-) 507 WP_020917424.1 single-stranded DNA-binding protein Machinery gene
  DQM48_RS08585 (NCTC8738_01815) rpsF 1673549..1673839 (-) 291 WP_006531977.1 30S ribosomal protein S6 -
  DQM48_RS08590 (NCTC8738_01816) - 1674036..1674182 (-) 147 WP_228380491.1 ATP-dependent protease -
  DQM48_RS08595 (NCTC8738_01817) - 1674373..1674693 (-) 321 WP_020917426.1 sortase A -
  DQM48_RS08600 (NCTC8738_01818) - 1674699..1675586 (-) 888 WP_058814222.1 hypothetical protein -
  DQM48_RS08605 (NCTC8738_01819) lepB 1675642..1676229 (-) 588 Protein_1647 signal peptidase I -
  DQM48_RS10170 (NCTC8738_01820) - 1676216..1676485 (-) 270 WP_162261965.1 DNA repair protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18641.27 Da        Isoelectric Point: 4.7294

>NTDB_id=1137839 DQM48_RS08580 WP_020917424.1 1673031..1673537(-) (ssbA) [Streptococcus lutetiensis strain NCTC8738]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGEFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1137839 DQM48_RS08580 WP_020917424.1 1673031..1673537(-) (ssbA) [Streptococcus lutetiensis strain NCTC8738]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGAATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.112

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.095

0.369

Multiple sequence alignment