Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM48_RS07435 Genome accession   NZ_LS483348
Coordinates   1451747..1452556 (-) Length   269 a.a.
NCBI ID   WP_020917220.1    Uniprot ID   A0AB33AMU0
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446747..1457556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS07425 (NCTC8738_01570) smc 1447148..1450687 (-) 3540 WP_111698990.1 chromosome segregation protein SMC -
  DQM48_RS07430 (NCTC8738_01571) rnc 1450840..1451526 (-) 687 WP_020917219.1 ribonuclease III -
  DQM48_RS07435 (NCTC8738_01572) vicX 1451747..1452556 (-) 810 WP_020917220.1 MBL fold metallo-hydrolase Regulator
  DQM48_RS07440 (NCTC8738_01573) vicK 1452557..1453909 (-) 1353 WP_020917221.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM48_RS07445 (NCTC8738_01574) vicR 1453902..1454612 (-) 711 WP_020917222.1 response regulator YycF Regulator
  DQM48_RS07450 (NCTC8738_01575) - 1454924..1455682 (+) 759 WP_020917223.1 amino acid ABC transporter ATP-binding protein -
  DQM48_RS07455 (NCTC8738_01576) - 1455699..1456511 (+) 813 WP_020917224.1 transporter substrate-binding domain-containing protein -
  DQM48_RS07460 (NCTC8738_01577) - 1456527..1457234 (+) 708 WP_020917225.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30068.98 Da        Isoelectric Point: 5.7857

>NTDB_id=1137832 DQM48_RS07435 WP_020917220.1 1451747..1452556(-) (vicX) [Streptococcus lutetiensis strain NCTC8738]
MSENAFKYSVLASGSTGNSFYVETPQKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARRYNLD
VYANAKTWQTIDERNMIGKLDVGQKHVFERGKTLTFGDIDIESFGVSHDAVDPQFYRLMKDNKSFVVLTDTGYVSDRMAG
VIENADGYLIESNHDVEILRAGSYPWSLKQRILSDRGHLSNEDGADTMIRTIGNRTKKIYLGHLSKENNIKELAHMTMEN
NLMKADFAVGHDMTVFDTSPDEAMPLAGL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1137832 DQM48_RS07435 WP_020917220.1 1451747..1452556(-) (vicX) [Streptococcus lutetiensis strain NCTC8738]
ATGTCTGAGAATGCTTTTAAATACAGTGTCTTAGCCTCCGGTTCAACTGGAAATTCATTTTATGTGGAAACGCCACAGAA
ACGTCTTTTGATAGATGCAGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGAAAACCAGAAGATT
TGGATGCTATTTTGATTACGCACGAACACTCTGACCATATTAAAGGAGTTGGAGTGCTGGCTCGCAGATACAATCTTGAT
GTATATGCCAATGCCAAAACTTGGCAAACGATTGATGAGCGCAACATGATTGGAAAACTTGACGTTGGGCAAAAACATGT
CTTTGAACGTGGTAAAACATTGACTTTTGGTGATATTGATATTGAAAGTTTTGGAGTCAGTCACGATGCTGTCGATCCGC
AATTTTACCGTTTGATGAAAGATAATAAGTCATTTGTCGTTCTGACAGATACGGGTTACGTTAGTGACCGAATGGCGGGT
GTGATTGAAAATGCTGATGGTTATCTGATTGAGTCAAACCATGATGTTGAGATTTTGCGTGCAGGTTCTTATCCATGGAG
CTTGAAACAACGTATTCTATCTGATCGTGGTCACTTGTCAAATGAAGATGGTGCTGATACCATGATTCGTACTATCGGCA
ATCGCACAAAGAAAATTTACCTTGGTCACTTGAGTAAAGAAAATAATATCAAAGAATTGGCTCATATGACTATGGAAAAT
AACTTGATGAAAGCCGATTTTGCTGTTGGTCATGACATGACCGTTTTTGATACATCACCTGATGAAGCAATGCCTTTAGC
AGGTCTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.903

99.257

0.773

Multiple sequence alignment