Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DQM48_RS06125 Genome accession   NZ_LS483348
Coordinates   1174453..1174893 (-) Length   146 a.a.
NCBI ID   WP_111699213.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169453..1179893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS06105 (NCTC8738_01271) - 1169455..1170135 (-) 681 WP_020916921.1 response regulator transcription factor -
  DQM48_RS06110 (NCTC8738_01272) - 1170138..1170773 (-) 636 WP_020916922.1 GTP pyrophosphokinase family protein -
  DQM48_RS06115 (NCTC8738_01273) rcrQ 1170873..1172645 (-) 1773 WP_020916923.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS06120 (NCTC8738_01274) rcrP 1172635..1174449 (-) 1815 WP_061407972.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS06125 (NCTC8738_01275) rcrR 1174453..1174893 (-) 441 WP_111699213.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM48_RS06130 (NCTC8738_01276) - 1175038..1175448 (-) 411 WP_111698858.1 peptide deformylase -
  DQM48_RS10435 - 1175445..1175657 (-) 213 WP_228380533.1 GNAT family N-acetyltransferase -
  DQM48_RS10440 (NCTC8738_01277) - 1175639..1175953 (-) 315 WP_231872433.1 hypothetical protein -
  DQM48_RS06140 (NCTC8738_01278) gdhA 1176111..1177460 (-) 1350 WP_043895060.1 NADP-specific glutamate dehydrogenase -
  DQM48_RS06145 (NCTC8738_01279) - 1177697..1178194 (+) 498 WP_043895061.1 HdeD family acid-resistance protein -
  DQM48_RS06150 (NCTC8738_01280) queF 1178231..1178722 (-) 492 WP_058832939.1 preQ(1) synthase -
  DQM48_RS06155 queE 1178872..1179590 (-) 719 Protein_1148 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17066.58 Da        Isoelectric Point: 9.2890

>NTDB_id=1137829 DQM48_RS06125 WP_111699213.1 1174453..1174893(-) (rcrR) [Streptococcus lutetiensis strain NCTC8738]
MRDKDSFSQFRYFINLMENRVHELGEQYGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IEVVPSEVDKRYKRVVLTELGKAKSKGIDAFHTAIHKQIFDGISREELEISGRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1137829 DQM48_RS06125 WP_111699213.1 1174453..1174893(-) (rcrR) [Streptococcus lutetiensis strain NCTC8738]
ATGCGAGACAAAGATTCGTTTTCACAATTTAGATACTTTATTAATTTGATGGAGAATCGGGTACATGAGCTCGGTGAGCA
GTATGGTGTTGAAAATCTCGCTGGTCCGCAGGGATTTGCAGTTCTTTATTTACGTGAAAATGAAGACAAAGAAGTTTTCA
TCAAGGACATTGAACGTAAGCTTAAGATTTCAAAATCTGTGACCAGTAATTTGATTAAACGAATGGAGAAGAATGGCTTT
ATTGAGGTGGTTCCGTCGGAGGTTGATAAGCGTTATAAGCGTGTCGTCTTGACTGAGCTGGGTAAAGCAAAATCCAAAGG
CATCGATGCTTTTCATACTGCTATTCATAAGCAAATTTTTGATGGTATTAGCCGTGAAGAGCTAGAAATTTCTGGCCGTG
TTTTTGATCGTATTTTGAAAAACTTAGAAAACAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

53.147

97.945

0.521

Multiple sequence alignment