Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM48_RS06115 Genome accession   NZ_LS483348
Coordinates   1170873..1172645 (-) Length   590 a.a.
NCBI ID   WP_020916923.1    Uniprot ID   A0AB33AM80
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165873..1177645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS06090 (NCTC8738_01268) - 1166357..1167271 (+) 915 WP_111698856.1 LysR family transcriptional regulator -
  DQM48_RS06095 (NCTC8738_01269) - 1167333..1168178 (+) 846 WP_020916919.1 aldo/keto reductase -
  DQM48_RS06100 (NCTC8738_01270) - 1168220..1169446 (-) 1227 WP_020916920.1 sensor histidine kinase -
  DQM48_RS06105 (NCTC8738_01271) - 1169455..1170135 (-) 681 WP_020916921.1 response regulator transcription factor -
  DQM48_RS06110 (NCTC8738_01272) - 1170138..1170773 (-) 636 WP_020916922.1 GTP pyrophosphokinase family protein -
  DQM48_RS06115 (NCTC8738_01273) rcrQ 1170873..1172645 (-) 1773 WP_020916923.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS06120 (NCTC8738_01274) rcrP 1172635..1174449 (-) 1815 WP_061407972.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS06125 (NCTC8738_01275) rcrR 1174453..1174893 (-) 441 WP_111699213.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM48_RS06130 (NCTC8738_01276) - 1175038..1175448 (-) 411 WP_111698858.1 peptide deformylase -
  DQM48_RS10435 - 1175445..1175657 (-) 213 WP_228380533.1 GNAT family N-acetyltransferase -
  DQM48_RS10440 (NCTC8738_01277) - 1175639..1175953 (-) 315 WP_231872433.1 hypothetical protein -
  DQM48_RS06140 (NCTC8738_01278) gdhA 1176111..1177460 (-) 1350 WP_043895060.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65326.44 Da        Isoelectric Point: 4.9659

>NTDB_id=1137827 DQM48_RS06115 WP_020916923.1 1170873..1172645(-) (rcrQ) [Streptococcus lutetiensis strain NCTC8738]
MENKKKVSFYGRMEPYIKGFQFPFILAVIGAIISATVTVIGPDKLKEITNTIMKGLTPTKMGTIPGVDLDKVGQIALTLA
ILYVISAVIGYIQNFTVATIVQRFSQRLRAAIQVKIDRVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSVVL
LIGSIFMMFHSNVSMALTAIGSVFIGFLLVVVIMGSSQPLFKRQQNNLAAVNGYVEEIYSGHNVVTSYNASEETSQAFKI
LNTNLYKSMWQSQFLSGIMMPLMIFIGNFGYVMVCVVGAVKVINGDITMGDVVAFMSYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEEEMEDESHKERQLSDVKGEVTFDNVFFGYSRDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQIAIDGVDTRLMSREEVHDQFAMVLQDTWLFEGTIKENLIYNQENITNEQVVAAAKAVGVHHFIMTLPDGYDT
YLDDSVTLSIGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKD
GNIIEQGNHDELMTEGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=1137827 DQM48_RS06115 WP_020916923.1 1170873..1172645(-) (rcrQ) [Streptococcus lutetiensis strain NCTC8738]
ATGGAAAATAAGAAAAAAGTATCCTTCTATGGCAGAATGGAGCCCTACATTAAAGGTTTCCAATTTCCATTTATCCTTGC
GGTAATTGGAGCCATTATTTCAGCGACTGTTACTGTTATTGGTCCTGATAAATTAAAAGAAATTACAAATACCATTATGA
AAGGCTTGACACCAACTAAAATGGGGACTATCCCTGGTGTTGACCTAGATAAGGTTGGGCAAATTGCTTTAACTCTTGCT
ATTTTATATGTGATTTCTGCAGTTATTGGTTATATTCAAAACTTTACAGTAGCTACCATCGTTCAACGTTTCTCTCAACG
TTTGCGTGCAGCTATCCAAGTTAAAATTGACCGTGTGCCGCTAAATTATTTTGATAGTCATTCACAAGGGGATACTCTTT
CTCGTGTGACAAATGACGTGGATTTGCTTGGTCAGTCTCTTAACCAAAGTTTGGGAACATTGGTCACTTCAGTAGTACTT
TTGATTGGTTCGATTTTCATGATGTTCCATTCAAATGTCAGCATGGCACTAACAGCAATTGGTTCGGTCTTTATCGGATT
CTTGCTAGTTGTTGTGATTATGGGGTCATCACAACCCTTGTTTAAACGCCAACAAAATAACTTGGCAGCAGTTAATGGTT
ATGTCGAAGAAATCTATTCTGGCCATAATGTAGTGACAAGCTATAACGCTTCTGAAGAAACTAGCCAAGCATTTAAAATT
CTTAACACAAATCTCTATAAATCAATGTGGCAATCGCAATTCTTATCAGGTATTATGATGCCGCTCATGATTTTCATTGG
TAACTTTGGTTATGTGATGGTCTGTGTAGTTGGTGCGGTTAAGGTGATTAATGGCGATATTACCATGGGTGATGTGGTTG
CCTTTATGAGTTACGTGCGTATTTTCTCACAACCTCTTTCTCAAATTGCTCAAGCTTTCACACAAATGCAATCAGCAACA
GCCGCTATGAGTCGTGTTTTTGAATTTCTTGAAGAAGAGGAAATGGAAGATGAATCACACAAAGAACGTCAATTGTCTGA
TGTTAAAGGTGAAGTTACTTTTGATAATGTCTTCTTTGGTTATTCTAGAGATAAAACCATTATCCATGATTTCTCTGCCG
TGGCAAAACCTGGTCAAAAGGTTGCTATCGTTGGACCAACTGGTGCTGGTAAGACAACCATCGTTAACCTTCTTATGAAA
TTCTATGAAATTGATAAAGGTCAAATTGCTATCGATGGTGTTGACACACGTTTGATGTCACGAGAAGAAGTCCATGACCA
ATTCGCAATGGTACTTCAAGATACTTGGTTGTTTGAAGGTACAATCAAAGAAAACTTGATTTACAACCAAGAAAATATCA
CTAATGAACAAGTAGTAGCAGCAGCTAAAGCAGTTGGTGTTCACCACTTTATCATGACGCTTCCTGATGGCTATGACACA
TACCTTGATGACTCTGTTACCCTTTCAATCGGTCAAAAACAACTCTTGACTATTGCGCGTGCCCTCTTGAAAGATGCTCC
GCTTCTTATTCTAGATGAAGCAACATCATCAGTCGATACACGTACGGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACCTCGTTTGTCATTGCTCACCGTTTATCAACGATTAAAAATGCTGACTTAATCCTTGTGATGAAAGAT
GGTAACATCATCGAGCAAGGAAATCATGATGAGTTGATGACAGAAGGTGGCTTCTATGCTGACCTTTACAACTCACAGTT
TGAAGTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

72.635

100

0.729

Multiple sequence alignment