Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQM48_RS06120 Genome accession   NZ_LS483348
Coordinates   1172635..1174449 (-) Length   604 a.a.
NCBI ID   WP_061407972.1    Uniprot ID   A0AB38G6E5
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1167635..1179449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS06100 (NCTC8738_01270) - 1168220..1169446 (-) 1227 WP_020916920.1 sensor histidine kinase -
  DQM48_RS06105 (NCTC8738_01271) - 1169455..1170135 (-) 681 WP_020916921.1 response regulator transcription factor -
  DQM48_RS06110 (NCTC8738_01272) - 1170138..1170773 (-) 636 WP_020916922.1 GTP pyrophosphokinase family protein -
  DQM48_RS06115 (NCTC8738_01273) rcrQ 1170873..1172645 (-) 1773 WP_020916923.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS06120 (NCTC8738_01274) rcrP 1172635..1174449 (-) 1815 WP_061407972.1 ABC transporter ATP-binding protein Regulator
  DQM48_RS06125 (NCTC8738_01275) rcrR 1174453..1174893 (-) 441 WP_111699213.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM48_RS06130 (NCTC8738_01276) - 1175038..1175448 (-) 411 WP_111698858.1 peptide deformylase -
  DQM48_RS10435 - 1175445..1175657 (-) 213 WP_228380533.1 GNAT family N-acetyltransferase -
  DQM48_RS10440 (NCTC8738_01277) - 1175639..1175953 (-) 315 WP_231872433.1 hypothetical protein -
  DQM48_RS06140 (NCTC8738_01278) gdhA 1176111..1177460 (-) 1350 WP_043895060.1 NADP-specific glutamate dehydrogenase -
  DQM48_RS06145 (NCTC8738_01279) - 1177697..1178194 (+) 498 WP_043895061.1 HdeD family acid-resistance protein -
  DQM48_RS06150 (NCTC8738_01280) queF 1178231..1178722 (-) 492 WP_058832939.1 preQ(1) synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67040.99 Da        Isoelectric Point: 5.9942

>NTDB_id=1137828 DQM48_RS06120 WP_061407972.1 1172635..1174449(-) (rcrP) [Streptococcus lutetiensis strain NCTC8738]
MLKIFKRLTAKEIIMMIIAVLFVCLNVFLDLKIPDYMSDITSLLSTQGTKAKDIFAWNLDAPGMRMVLLSLGSFAASVVV
GFLAARIAASFSTRLRDDIFHSVLDFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGLQVITKGPIMAIWAITKIADKNH
EWLMVLVVAVAVMILMLIFLLMMVMPKQRMIQKLTDKLNSITRESLTGIRVVRAYNAESYQDGKFAKANDNVTNFNLFIN
RSMALMSPVMTSISSGMTLAIYWIGAFLIEDIAIPKDPTKIAGAMQDKVNIFSDMVVYSSYAMQVVIGFMMMIIVFFILP
RAVVAAGRINEVLDTKPSVTYPEESKAQPAEKGSVEFDDVSFRYSEHSEAVLEHVSFKAKAGDTVAFIGSTGSGKSTLVN
LIPRFYDASEGTIKVDGVDVRDYDHDTLHKIVGYIPQKAVLFSGNIASNMDMGDSNSSPLDDDKMWEALDLAQGKDFVES
KEGQLKAKVSQGGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRSQLKERTADMTKLIVAQRISTIMDA
DQILVLDEGKVVGQGTHEELLANNEVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1137828 DQM48_RS06120 WP_061407972.1 1172635..1174449(-) (rcrP) [Streptococcus lutetiensis strain NCTC8738]
ATGTTAAAAATTTTTAAACGTTTAACGGCAAAAGAAATCATCATGATGATTATTGCCGTATTATTTGTGTGTTTGAATGT
TTTCTTGGATTTAAAAATTCCAGATTACATGTCTGATATCACATCCTTACTCTCAACTCAAGGAACAAAAGCAAAAGATA
TTTTTGCTTGGAATCTAGATGCCCCAGGTATGCGTATGGTCTTGCTTTCTTTAGGAAGTTTTGCAGCCTCTGTGGTTGTC
GGATTCTTAGCCGCACGCATCGCAGCAAGTTTCAGTACGCGTTTGCGTGATGATATTTTCCATAGTGTTTTGGACTTTTC
AGATGCGGAAATTAAGAAATTTTCAATTCCAAGTCTTTTAACACGTACAACAAATGACATTACTCAAATTCAGTTGGTCT
TTACCATGGGACTTCAAGTTATTACCAAAGGACCAATTATGGCAATCTGGGCTATTACGAAGATTGCTGATAAAAACCAT
GAGTGGTTGATGGTGCTGGTTGTAGCTGTGGCTGTCATGATTTTAATGTTGATTTTCTTGCTCATGATGGTAATGCCAAA
ACAACGCATGATTCAAAAATTAACGGATAAATTGAACAGTATTACACGTGAATCTTTGACTGGTATTCGTGTTGTTCGTG
CTTACAATGCCGAAAGTTATCAAGATGGTAAATTTGCTAAAGCCAATGATAACGTGACGAACTTTAACCTCTTTATCAAC
CGTTCAATGGCTTTGATGTCACCAGTCATGACAAGTATTTCAAGCGGGATGACTTTGGCAATTTATTGGATTGGTGCTTT
CCTGATTGAAGATATTGCTATTCCAAAAGACCCAACTAAGATTGCTGGTGCCATGCAAGATAAGGTAAATATCTTCTCAG
ATATGGTGGTTTATTCCTCATATGCCATGCAAGTTGTTATTGGTTTTATGATGATGATTATCGTTTTCTTCATTCTTCCC
CGTGCGGTTGTCGCTGCAGGTCGTATTAATGAAGTCTTGGATACGAAGCCATCTGTTACTTATCCTGAAGAAAGTAAAGC
TCAGCCGGCCGAAAAAGGTTCTGTTGAATTTGATGACGTATCTTTCCGCTACAGCGAGCATTCGGAAGCTGTTTTGGAAC
ATGTTTCCTTTAAGGCTAAAGCAGGTGATACGGTTGCCTTTATCGGATCAACAGGTTCTGGTAAATCTACTCTAGTTAAT
TTGATTCCTCGTTTCTATGATGCAAGTGAAGGAACAATCAAAGTTGACGGTGTTGACGTTCGTGATTACGATCATGACAC
CCTTCACAAGATTGTTGGTTACATTCCGCAAAAAGCTGTGCTCTTTAGTGGAAACATCGCTTCAAATATGGACATGGGTG
ACAGCAATAGTTCACCGCTTGATGATGATAAGATGTGGGAAGCACTTGATTTGGCACAAGGTAAAGATTTCGTTGAAAGT
AAAGAGGGTCAACTAAAAGCTAAAGTCTCCCAAGGTGGTCAAAACTTCTCAGGTGGTCAAAAACAACGCTTGGCGATTGC
GCGTGCCCTTGCTCGTAAACCTGAAATTATCATCTTTGATGATTCATTCTCAGCGCTTGATTATAAGACTGACCGAATCC
TTCGTTCTCAATTGAAAGAACGTACAGCTGACATGACTAAGTTGATTGTTGCCCAACGTATTTCAACAATCATGGATGCT
GATCAGATCTTAGTCTTGGATGAAGGTAAAGTAGTTGGTCAAGGTACTCACGAAGAATTGCTTGCAAATAATGAAGTTTA
TCGTGAAATTGCTTACTCACAATTATCTAAGGAGGAATTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(16-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.273

100

0.674

Multiple sequence alignment