Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM73_RS05365 Genome accession   NZ_LS483346
Coordinates   1095552..1097513 (+) Length   653 a.a.
NCBI ID   WP_002924924.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090552..1102513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS05355 (NCTC11085_01048) - 1091493..1092233 (-) 741 WP_002924928.1 hypothetical protein -
  DQM73_RS05360 (NCTC11085_01049) - 1092470..1095268 (+) 2799 WP_002924926.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  DQM73_RS05365 (NCTC11085_01050) amiA 1095552..1097513 (+) 1962 WP_002924924.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS05370 (NCTC11085_01051) - 1097626..1098483 (+) 858 WP_002924914.1 GNAT family N-acetyltransferase -
  DQM73_RS05375 (NCTC11085_01052) - 1098603..1099505 (+) 903 WP_032908183.1 LysR family transcriptional regulator -
  DQM73_RS05380 (NCTC11085_01053) lspA 1099509..1099976 (+) 468 WP_002924904.1 signal peptidase II -
  DQM73_RS05385 (NCTC11085_01054) - 1099960..1100856 (+) 897 WP_002924901.1 RluA family pseudouridine synthase -
  DQM73_RS05390 (NCTC11085_01055) proB 1100972..1102081 (+) 1110 WP_032908182.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72432.06 Da        Isoelectric Point: 4.6054

>NTDB_id=1137703 DQM73_RS05365 WP_002924924.1 1095552..1097513(+) (amiA) [Streptococcus sanguinis strain NCTC11085]
MKASKWLIATGVALSAGLLLTACSQSSSSTNNYTYVYSSDPDSLNYLATNRATTGDVISNLVDGLFENDKYGNLVPSIAK
SWTVSKDGLTYTYKLRDDAKWYTSDGEEYAEVKAQDFVTGLKYAADENSEAIYLVQDSVKGLDAYIKGEDKNFDNVGVKA
IDDHTLQYTLTRPEPYWNSKTTSTILFPVNEEFLKAEGSNFGSVKPSSILYNGPYLLKSLTSKSVMEFVKNQNYYDKDNV
TLDSIKLTYYDGNDQEALIRNFSDGVYSTARLYPNSSGFASVKKKYADNIVYSPQDSTSYYYNFNYNRQSYNHTSKTTDA
QKSATNEAIMNKDFRQAINFAFDRTSYGAQGNGEDGATKVLRNTLVPPTFVQIGDKDFGTVVGEKLVNYGSQWQGIDLSD
AQDPYYNPEKAKAKFAEAKQALQAKGVEFPIHLDMPVDQSSTIGVQWASSTKQSIESALGAENVVIDLQKMSTDDLNNIT
YFANSAAQKDYDMSTGGWTGDYQDPSTYLDTLNIKNGGSLQNFGFEPGQDNDKIKELGLDTYTKMLEEANAETNDVQLRY
EKYAEAEAWLLDSGLIIPTVSQGATPSVTKSVPFTKAYSPVGVKGSAYNFKLTQLQKDVVTTKEYEAAKKKWKEEATAAN
KKAQEELADHVEK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1137703 DQM73_RS05365 WP_002924924.1 1095552..1097513(+) (amiA) [Streptococcus sanguinis strain NCTC11085]
ATGAAAGCATCAAAGTGGCTGATTGCGACTGGAGTTGCACTGAGTGCCGGGCTATTGCTAACGGCTTGTAGCCAGTCTTC
ATCTAGCACAAATAATTATACTTACGTTTATAGTTCAGACCCTGACAGCTTGAACTATCTTGCTACAAACCGTGCAACGA
CAGGTGATGTCATTTCCAACCTGGTTGATGGACTTTTTGAAAATGACAAGTACGGGAACCTGGTTCCCTCAATCGCGAAG
TCATGGACAGTTTCTAAGGATGGTCTGACTTATACTTATAAGCTGCGTGATGATGCTAAATGGTACACATCCGATGGTGA
AGAATATGCAGAAGTAAAGGCCCAGGACTTTGTGACTGGCTTGAAGTATGCAGCGGATGAAAATTCTGAAGCTATTTATC
TAGTTCAGGACTCTGTGAAGGGCTTGGATGCTTATATCAAGGGTGAAGATAAGAATTTTGACAATGTTGGTGTCAAAGCT
ATTGATGACCATACCCTGCAATACACTCTGACCCGCCCTGAGCCTTACTGGAACTCTAAAACAACCAGCACAATTCTCTT
CCCAGTCAATGAAGAGTTTCTGAAAGCAGAAGGAAGCAATTTTGGCTCTGTCAAGCCATCTAGCATCCTCTATAATGGTC
CTTACTTGCTCAAGTCTCTGACTTCCAAGTCTGTGATGGAATTTGTCAAGAACCAAAACTACTATGACAAAGACAATGTC
ACTCTGGATAGCATCAAGCTGACCTACTATGATGGAAATGATCAGGAAGCGCTGATTCGTAACTTCAGCGATGGCGTTTA
CAGCACGGCTCGTCTCTATCCGAATAGCTCTGGCTTTGCTTCAGTCAAGAAGAAATATGCGGACAATATCGTATACAGCC
CGCAGGATTCTACTTCTTATTACTATAATTTCAACTACAACCGTCAGTCTTACAATCATACTTCTAAAACAACAGACGCT
CAAAAATCTGCTACTAACGAAGCAATCATGAACAAGGACTTCCGTCAGGCTATTAACTTTGCCTTTGACCGTACATCTTA
TGGTGCGCAAGGAAATGGTGAAGACGGAGCGACTAAGGTCTTGAGAAACACCTTAGTGCCGCCTACTTTTGTTCAAATTG
GCGACAAGGACTTTGGAACCGTTGTTGGGGAAAAATTAGTCAACTATGGTAGCCAATGGCAAGGAATTGATCTTTCTGAC
GCTCAAGATCCTTACTACAATCCTGAAAAAGCTAAGGCGAAATTTGCAGAAGCTAAGCAAGCCTTGCAGGCTAAAGGAGT
TGAATTCCCAATTCACTTAGATATGCCTGTGGATCAGTCTAGCACGATTGGCGTTCAATGGGCTAGCTCAACTAAGCAGT
CTATCGAATCGGCTCTTGGAGCAGAAAATGTCGTCATTGACCTGCAAAAGATGAGCACAGACGATCTTAATAATATCACC
TATTTTGCTAATTCTGCTGCTCAGAAAGACTATGATATGTCTACTGGTGGCTGGACTGGTGACTACCAAGACCCATCTAC
CTACCTTGACACTCTTAATATCAAGAACGGTGGAAGCTTGCAAAACTTTGGTTTTGAACCTGGTCAAGACAATGATAAGA
TTAAAGAGCTAGGCTTGGATACATATACTAAGATGCTGGAAGAAGCCAATGCTGAAACCAACGATGTGCAGCTGCGTTAC
GAAAAGTATGCAGAAGCGGAAGCTTGGTTGCTAGATAGTGGCTTAATTATCCCGACTGTTTCACAAGGGGCAACGCCGTC
GGTTACTAAATCAGTGCCATTTACAAAGGCCTACTCACCAGTTGGTGTCAAAGGTTCAGCTTACAACTTCAAGCTGACTC
AGCTTCAGAAGGATGTTGTAACGACCAAAGAATATGAAGCTGCTAAGAAAAAATGGAAAGAAGAAGCTACTGCGGCAAAT
AAAAAAGCTCAGGAAGAACTTGCTGACCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.64

100

0.559
  amiA3 Streptococcus thermophilus LMD-9

55.251

100

0.556
  amiA3 Streptococcus thermophilus LMG 18311

55.099

100

0.554

Multiple sequence alignment