Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   DQL21_RS06900 Genome accession   NZ_LS483343
Coordinates   1345680..1346681 (-) Length   333 a.a.
NCBI ID   WP_018030227.1    Uniprot ID   A0A2X3Y0B7
Organism   Streptococcus ferus strain NCTC12278     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340680..1351681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS06880 (NCTC12278_01376) - 1341225..1341590 (-) 366 WP_018030223.1 hypothetical protein -
  DQL21_RS06885 (NCTC12278_01377) - 1341709..1343043 (-) 1335 WP_018030224.1 glycosyltransferase family 4 protein -
  DQL21_RS06890 (NCTC12278_01378) - 1343045..1344043 (-) 999 WP_026161932.1 glycosyltransferase family 4 protein -
  DQL21_RS06895 (NCTC12278_01379) - 1344127..1345593 (-) 1467 WP_018030226.1 alpha-amylase -
  DQL21_RS06900 (NCTC12278_01380) ccpA 1345680..1346681 (-) 1002 WP_018030227.1 catabolite control protein A Regulator
  DQL21_RS06905 (NCTC12278_01381) - 1346843..1347922 (+) 1080 WP_026161933.1 Xaa-Pro peptidase family protein -
  DQL21_RS06910 (NCTC12278_01382) - 1347952..1349022 (-) 1071 WP_018030229.1 hypothetical protein -
  DQL21_RS06915 (NCTC12278_01383) - 1349015..1351435 (-) 2421 WP_018030230.1 phosphoenolpyruvate synthase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36511.61 Da        Isoelectric Point: 6.0686

>NTDB_id=1137607 DQL21_RS06900 WP_018030227.1 1345680..1346681(-) (ccpA) [Streptococcus ferus strain NCTC12278]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
NLAKGIDDIATMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDNAKAVEDVVDLFAKSHDKIALVSGPLIDDINGQVRFAGYKAGLKKNKLPFKEGLVFEANYRYQEGFDLAQRVINSG
ATAAFVAEDELAAGLLNGLFAAGKKVPEDFEIITSNDSAITQFTRPNLSSISQPVYDLGAVGMRMLTKIMNKEELDEKEI
ILNHGITKRGSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1137607 DQL21_RS06900 WP_018030227.1 1345680..1346681(-) (ccpA) [Streptococcus ferus strain NCTC12278]
ATGAACACTGATGATACGATTACAATCTACGATGTTGCGCGTGAGGCCGGGGTTTCCATGGCTACCGTCAGCCGCGTTGT
AAATGGTAATAAAAATGTTAAAGAAAATACTCGGAAAAAAGTTCTGGAAGTTATTGAGCGCCTTGACTACCGTCCTAATG
CTGTTGCCCGCGGTTTGGCCAGTAAAAAAACGACGACAGTAGGGGTAGTGATTCCTAATATCGCCAATGCCTACTTCTCA
AATCTGGCTAAGGGGATTGATGATATTGCTACCATGTATAAGTACAATATCGTTCTGGCGTCTAGTGATGAAGATGATGA
CAAGGAAGTGAATGTGGTCAATACCTTGTTCGCAAAACAGGTGGATGGCATTATCTTTATGGGACATCATCTGACAGAGA
AAATTCGTGCCGAGTTTTCGCGCTCGAGGACACCGATTGTTCTTGCGGGTACGGTTGATTTGGAACATCAGCTGCCAAGT
GTGAATATTGATAATGCTAAGGCTGTTGAAGACGTCGTTGACCTTTTTGCCAAATCACATGATAAGATTGCTTTGGTATC
CGGTCCCCTCATTGATGATATCAATGGTCAGGTTCGCTTTGCCGGCTATAAGGCAGGTCTCAAGAAAAATAAACTGCCTT
TCAAGGAAGGTCTTGTTTTTGAAGCGAACTATCGTTACCAAGAGGGCTTTGATTTAGCTCAGAGGGTCATCAACTCTGGA
GCGACAGCTGCTTTTGTGGCGGAAGATGAGCTGGCTGCGGGCCTTTTAAATGGTCTTTTCGCAGCAGGTAAGAAAGTGCC
TGAGGACTTTGAAATTATCACCAGTAATGACTCTGCGATTACGCAGTTTACGAGACCTAATCTTAGCTCTATCAGTCAGC
CAGTTTATGATTTGGGAGCGGTTGGGATGAGGATGCTGACCAAAATCATGAATAAGGAAGAATTGGACGAAAAAGAAATT
ATCCTTAATCATGGCATTACCAAACGTGGTTCGACCAAGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3Y0B7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

76.877

100

0.769
  ccpA Streptococcus pneumoniae D39

74.775

100

0.748
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.985

99.399

0.547

Multiple sequence alignment