Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   DQL23_RS09065 Genome accession   NZ_LS483341
Coordinates   1875402..1876406 (-) Length   334 a.a.
NCBI ID   WP_048775076.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1870402..1881406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS09045 (NCTC7865_01825) - 1871649..1872275 (-) 627 WP_196755809.1 AAA family ATPase -
  DQL23_RS09050 (NCTC7865_01827) - 1872543..1872908 (-) 366 WP_060553993.1 hypothetical protein -
  DQL23_RS09055 (NCTC7865_01828) - 1872944..1874257 (-) 1314 WP_060553994.1 glycosyltransferase family 4 protein -
  DQL23_RS09060 (NCTC7865_01829) - 1874259..1875257 (-) 999 WP_060954917.1 glycosyltransferase family 4 protein -
  DQL23_RS09065 (NCTC7865_01830) ccpA 1875402..1876406 (-) 1005 WP_048775076.1 catabolite control protein A Regulator
  DQL23_RS09070 (NCTC7865_01831) - 1876571..1877653 (+) 1083 WP_060553996.1 M24 family metallopeptidase -
  DQL23_RS09075 (NCTC7865_01832) - 1878112..1879158 (+) 1047 WP_060553997.1 FecCD family ABC transporter permease -
  DQL23_RS09080 (NCTC7865_01833) - 1879160..1879915 (+) 756 WP_060553998.1 ABC transporter ATP-binding protein -
  DQL23_RS09085 (NCTC7865_01834) - 1879971..1880999 (+) 1029 WP_060553999.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 37105.21 Da        Isoelectric Point: 6.8837

>NTDB_id=1137501 DQL23_RS09065 WP_048775076.1 1875402..1876406(-) (ccpA) [Streptococcus gordonii strain NCTC7865]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPSITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTIDVEHQLPS
VNIDYKQATIDAITFLAKRNKKIAFVCGPLVDDINGKVRLSGYKTALKSKKLSYSEGLVFESKYSYDDGYNLAERVIASK
ATAAFVTGDELAAGLLNGLADRGVKIPEDFEIITSDDSQISRYTRPNLSTISQPLYDLGAISMRMLTKIMHKEELEEREV
VLSHGIYERNSTRK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1137501 DQL23_RS09065 WP_048775076.1 1875402..1876406(-) (ccpA) [Streptococcus gordonii strain NCTC7865]
ATGAACACAGACGATACAGTAACCATTTATGATGTCGCCCGTGAAGCAGGGGTTTCTATGGCGACAGTTAGTCGTGTAGT
TAATGGAAACAAGAATGTAAAAGAAAACACTCGGAAAAAAGTTTTGGAAGTAATTGATCGCCTTGATTATCGTCCAAATG
CAGTGGCTCGCGGTTTGGCTAGCAAGAAGACTACAACAGTTGGAGTCGTGATTCCAAGCATTACAAATAGTTATTTCTCA
ACACTGGCTAAGGGAATTGATGATATTGCTGAGATGTATAAATACAATATCGTCCTAGCAAATAGTGACGAGGATGATGA
TAAGGAAGTTTCAGTTGTAAATACTCTCTTTTCTAAGCAAGTAGATGGTATTATCTTTATGGGTTACCACCTTACAGAAA
AGATTCGTTCAGAATTTTCTCGTTCACGCACGCCAGTTGTCTTGGCTGGAACTATTGATGTGGAGCACCAATTGCCAAGT
GTTAATATAGATTATAAACAGGCTACGATTGACGCTATCACATTCCTTGCTAAGCGCAATAAAAAAATTGCTTTTGTATG
CGGACCTTTAGTTGATGATATCAATGGAAAAGTACGCTTATCCGGTTATAAAACGGCTCTTAAGAGCAAAAAGCTGTCAT
ACAGCGAAGGTCTTGTCTTTGAGTCTAAGTACAGCTATGATGATGGTTATAATTTAGCTGAACGAGTAATTGCTTCTAAA
GCAACGGCTGCTTTTGTGACAGGTGATGAGCTGGCAGCTGGTCTTTTAAACGGACTAGCTGATCGCGGAGTAAAAATTCC
AGAGGATTTTGAAATTATCACTAGCGATGATTCACAAATATCTCGCTATACACGTCCAAATTTGTCAACTATCAGCCAGC
CTTTATATGATTTAGGTGCTATTAGTATGCGTATGCTGACTAAGATTATGCACAAAGAAGAGTTGGAAGAACGTGAAGTT
GTTCTGTCTCATGGTATTTACGAACGTAACTCAACTAGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

99.401

100

0.994

  ccpA Streptococcus pneumoniae D39

87.126

100

0.871

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.1

99.102

0.566


Multiple sequence alignment