Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM35_RS01740 Genome accession   NZ_LS483338
Coordinates   318537..319028 (+) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus pyogenes strain NCTC12064     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 313537..324028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM35_RS01710 (NCTC12064_00334) - 314726..315226 (+) 501 WP_021299043.1 phosphatase PAP2 family protein -
  DQM35_RS01715 (NCTC12064_00335) trxA 315289..315621 (+) 333 WP_256363924.1 thioredoxin -
  DQM35_RS01720 (NCTC12064_00336) - 315673..316260 (-) 588 WP_020837707.1 helix-turn-helix domain-containing protein -
  DQM35_RS01725 (NCTC12064_00337) mutY 316437..317591 (-) 1155 WP_002983107.1 A/G-specific adenine glycosylase -
  DQM35_RS01730 (NCTC12064_00338) - 317759..318052 (+) 294 WP_002983113.1 hypothetical protein -
  DQM35_RS01735 (NCTC12064_00339) rpsF 318225..318515 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  DQM35_RS01740 (NCTC12064_00340) ssbA 318537..319028 (+) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  DQM35_RS01745 (NCTC12064_00341) rpsR 319193..319432 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQM35_RS01750 (NCTC12064_00342) - 319563..320219 (-) 657 WP_002983144.1 DUF1129 domain-containing protein -
  DQM35_RS01755 (NCTC12064_00343) - 320352..321296 (-) 945 WP_002983147.1 magnesium transporter CorA family protein -
  DQM35_RS01760 (NCTC12064_00344) - 321540..322694 (-) 1155 WP_094751290.1 site-specific integrase -
  DQM35_RS01765 (NCTC12064_00345) - 322813..323334 (-) 522 WP_002986895.1 hypothetical protein -
  DQM35_RS01770 (NCTC12064_00346) - 323345..323725 (-) 381 WP_002986894.1 ImmA/IrrE family metallo-endopeptidase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=1137296 DQM35_RS01740 WP_002993238.1 318537..319028(+) (ssbA) [Streptococcus pyogenes strain NCTC12064]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1137296 DQM35_RS01740 WP_002993238.1 318537..319028(+) (ssbA) [Streptococcus pyogenes strain NCTC12064]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment