Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQL28_RS01410 Genome accession   NZ_LS483334
Coordinates   256289..257215 (+) Length   308 a.a.
NCBI ID   WP_111676128.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12050     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 251289..262215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL28_RS01400 (NCTC12050_00274) amiA 252752..254722 (+) 1971 WP_111676126.1 peptide ABC transporter substrate-binding protein Regulator
  DQL28_RS01405 (NCTC12050_00275) amiC 254787..256289 (+) 1503 WP_002991105.1 ABC transporter permease Regulator
  DQL28_RS01410 (NCTC12050_00276) amiD 256289..257215 (+) 927 WP_111676128.1 oligopeptide ABC transporter permease OppC Regulator
  DQL28_RS01415 (NCTC12050_00277) amiE 257224..258294 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  DQL28_RS01420 (NCTC12050_00278) amiF 258287..259210 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL28_RS09715 - 259248..259337 (-) 90 WP_109821088.1 IS3 family transposase -
  DQL28_RS09425 - 259358..259603 (-) 246 WP_030126956.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34874.86 Da        Isoelectric Point: 8.5670

>NTDB_id=1137067 DQL28_RS01410 WP_111676128.1 256289..257215(+) (amiD) [Streptococcus pyogenes strain NCTC12050]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMIMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1137067 DQL28_RS01410 WP_111676128.1 256289..257215(+) (amiD) [Streptococcus pyogenes strain NCTC12050]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGATTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment