Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   DQL25_RS07275 Genome accession   NZ_LS483330
Coordinates   1425387..1426388 (-) Length   333 a.a.
NCBI ID   WP_111703435.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1420387..1431388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS07260 (NCTC8328_01453) thrS 1420558..1422501 (-) 1944 WP_002985672.1 threonine--tRNA ligase -
  DQL25_RS07265 (NCTC8328_01455) - 1422923..1424257 (-) 1335 WP_011284590.1 glycosyltransferase family 4 protein -
  DQL25_RS07270 (NCTC8328_01456) - 1424259..1425257 (-) 999 WP_002985678.1 glycosyltransferase family 4 protein -
  DQL25_RS07275 (NCTC8328_01457) ccpA 1425387..1426388 (-) 1002 WP_111703435.1 catabolite control protein A Regulator
  DQL25_RS07280 (NCTC8328_01458) - 1426562..1427647 (+) 1086 WP_002985682.1 aminopeptidase P family protein -
  DQL25_RS07285 (NCTC8328_01459) - 1427696..1428361 (+) 666 WP_111703437.1 NAD(P)H-dependent oxidoreductase -
  DQL25_RS07290 (NCTC8328_01460) - 1428372..1428749 (+) 378 WP_111703439.1 VOC family protein -
  DQL25_RS07295 (NCTC8328_01461) - 1428894..1429820 (+) 927 WP_047235928.1 glycosyltransferase family 2 protein -
  DQL25_RS07300 (NCTC8328_01462) - 1430031..1430714 (+) 684 WP_023078761.1 DUF969 domain-containing protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36700.83 Da        Isoelectric Point: 5.9985

>NTDB_id=1136871 DQL25_RS07275 WP_111703435.1 1425387..1426388(-) (ccpA) [Streptococcus pyogenes strain NCTC8328]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLDHQLPS
VNIDYRAAVSNVVDILAETHKCIAFVSGPLIDDINGKVRLAGYKEGLKHNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1136871 DQL25_RS07275 WP_111703435.1 1425387..1426388(-) (ccpA) [Streptococcus pyogenes strain NCTC8328]
ATGAATACAGATGATACCATTACAATTTATGATGTTGCCCGTGAAGCTGGTGTTTCAATGGCAACCGTTAGTCGTGTTGT
TAATGGCAATAAAAATGTTAAGGAAAATACACGTAAGAAAGTTTTAGAAGTTATTGATCGCCTTGACTATCGTCCCAATG
CTGTCGCGCGTGGTCTTGCCAGCAAAAAGACAACAACCGTTGGCGTTGTGATTCCAAATATTGCAAATAGTTATTTTTCT
ATCTTAGCTAAGGGTATTGACGATATCGCCGCTATGTACAAATATAATATTGTGCTTGCCTCCAGTGATGAAGATGATGA
TAAGGAGGTTAATGTTGTCAATACCCTTTTTGCCAAGCAAGTGGATGGTATTATTTTTATGGGGCATCACTTGACAGAAA
AAATCCGGGCCGAGTTTTCACGCTCTCGTACTCCAGTTGTTTTGGCAGGAACTGTAGATCTTGATCATCAATTACCAAGC
GTCAACATTGACTATAGAGCCGCGGTGTCAAACGTTGTTGATATTTTAGCTGAAACTCATAAGTGTATCGCTTTTGTGTC
AGGACCACTCATTGATGATATCAATGGTAAAGTGCGCTTAGCAGGGTACAAAGAAGGATTGAAGCACAATAAGCTTGACT
TCAAAGAAGGTCTTGTTTTTGAAGCGAACTATTCTTATAAAGAAGGATTTGAATTGGCGCAGCGCGTCATTAACTCAGGA
GCAACAGCGGCTTATGTGGCTGAAGATGAATTGGCAGCGGGCCTTTTAAACGGCTTGTTTGAAGCAGGTAAACGCGTACC
AGAGGACTTTGAAATCATCACTAGCAACGATTCACCAGTGGTTCAATACACTCGTCCCAATTTGAGTTCTATCAGTCAAC
CTGTTTATGACTTAGGTGCTGTTAGCATGCGGATGTTGACTAAAATCATGAACAAAGAAGAGTTGGAAGAAAAAGAAATT
CTTTTGAATCATGGTATTAAAAAACGTGGGACAACTAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.078

100

0.781

  ccpA Streptococcus pneumoniae D39

75.375

100

0.754

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.193

99.399

0.559


Multiple sequence alignment