Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQL25_RS01390 Genome accession   NZ_LS483330
Coordinates   259286..260788 (+) Length   500 a.a.
NCBI ID   WP_009880667.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 254286..265788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS01375 (NCTC8328_00272) - 254339..255520 (-) 1182 WP_002992220.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQL25_RS01380 (NCTC8328_00273) pbp3 255688..256920 (-) 1233 WP_009881097.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL25_RS01385 (NCTC8328_00274) amiA 257251..259221 (+) 1971 WP_012560447.1 peptide ABC transporter substrate-binding protein Regulator
  DQL25_RS01390 (NCTC8328_00275) amiC 259286..260788 (+) 1503 WP_009880667.1 ABC transporter permease Regulator
  DQL25_RS01395 (NCTC8328_00276) amiD 260788..261714 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQL25_RS01400 (NCTC8328_00277) amiE 261723..262793 (+) 1071 WP_111703127.1 ABC transporter ATP-binding protein Regulator
  DQL25_RS01405 (NCTC8328_00278) amiF 262786..263709 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL25_RS09845 - 263964..264283 (-) 320 Protein_235 IS3 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56135.49 Da        Isoelectric Point: 10.2222

>NTDB_id=1136841 DQL25_RS01390 WP_009880667.1 259286..260788(+) (amiC) [Streptococcus pyogenes strain NCTC8328]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAVYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1136841 DQL25_RS01390 WP_009880667.1 259286..260788(+) (amiC) [Streptococcus pyogenes strain NCTC8328]
ATGAAAAAATACATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTGTCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGATCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.4

100

0.594
  amiC Streptococcus thermophilus LMD-9

59.4

100

0.594
  amiC Streptococcus thermophilus LMG 18311

59

100

0.59

Multiple sequence alignment