Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQL25_RS01400 Genome accession   NZ_LS483330
Coordinates   261723..262793 (+) Length   356 a.a.
NCBI ID   WP_111703127.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 256723..267793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS01385 (NCTC8328_00274) amiA 257251..259221 (+) 1971 WP_012560447.1 peptide ABC transporter substrate-binding protein Regulator
  DQL25_RS01390 (NCTC8328_00275) amiC 259286..260788 (+) 1503 WP_009880667.1 ABC transporter permease Regulator
  DQL25_RS01395 (NCTC8328_00276) amiD 260788..261714 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQL25_RS01400 (NCTC8328_00277) amiE 261723..262793 (+) 1071 WP_111703127.1 ABC transporter ATP-binding protein Regulator
  DQL25_RS01405 (NCTC8328_00278) amiF 262786..263709 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL25_RS09845 - 263964..264283 (-) 320 Protein_235 IS3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39659.76 Da        Isoelectric Point: 5.8952

>NTDB_id=1136843 DQL25_RS01400 WP_111703127.1 261723..262793(+) (amiE) [Streptococcus pyogenes strain NCTC8328]
MTKENNVILTAKDVVVEFDVRDRILTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQGLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1136843 DQL25_RS01400 WP_111703127.1 261723..262793(+) (amiE) [Streptococcus pyogenes strain NCTC8328]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTATTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGGTTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772
  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761
  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761
  oppD Streptococcus mutans UA159

56.677

94.663

0.537

Multiple sequence alignment