Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   DQL47_RS08010 Genome accession   NZ_LS483328
Coordinates   1680024..1680773 (-) Length   249 a.a.
NCBI ID   WP_111690344.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675024..1685773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS07995 (NCTC12090_01617) - 1676979..1678337 (+) 1359 WP_111690342.1 bacteriocin secretion accessory protein -
  DQL47_RS08000 (NCTC12090_01618) - 1678437..1678571 (+) 135 WP_014623342.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  DQL47_RS10565 (NCTC12090_01619) - 1678690..1680024 (-) 1335 WP_111690343.1 sensor histidine kinase -
  DQL47_RS08010 (NCTC12090_01620) comE/blpR 1680024..1680773 (-) 750 WP_111690344.1 LytR/AlgR family response regulator transcription factor Regulator
  DQL47_RS08015 (NCTC12090_01621) - 1681408..1681611 (-) 204 WP_012516120.1 TmhB bacteriocin enhancer peptide -
  DQL47_RS08020 (NCTC12090_01622) - 1681628..1681885 (-) 258 WP_043030068.1 Blp family class II bacteriocin -
  DQL47_RS08025 (NCTC12090_01623) rlmD 1682206..1683573 (-) 1368 WP_111690345.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  DQL47_RS08030 (NCTC12090_01624) - 1683570..1684538 (-) 969 WP_111690346.1 helix-hairpin-helix domain-containing protein -
  DQL47_RS08035 (NCTC12090_01625) recX 1684602..1685378 (+) 777 WP_111690347.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 29217.65 Da        Isoelectric Point: 8.4602

>NTDB_id=1136755 DQL47_RS08010 WP_111690344.1 1680024..1680773(-) (comE/blpR) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MRVVILEDDMIQQRYLEKLIKELEVKHQLLFQGLDCFGRSHQLLSAIKKNCGQQLFFLDIEIKNEDKKGLEVARQIRQIN
PDAMIVFVTTHSEFMPLAFQYQVSALDYIDKELPHTEFVQRVETALLYAVRQNSETIAESAFYFTSRYAQVQVPFNDILY
IETSSRAHRVNLYTKKERMQFTGTLTDILKQESRFLQCHRSFLINPRNVVRVDKIERVVYFRNGSSCLIARSKMNSVLTT
IENLHRGDN

Nucleotide


Download         Length: 750 bp        

>NTDB_id=1136755 DQL47_RS08010 WP_111690344.1 1680024..1680773(-) (comE/blpR) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
GTGAGAGTAGTTATTTTAGAAGATGATATGATTCAGCAGAGATATTTAGAAAAGCTCATTAAAGAGCTTGAGGTTAAGCA
CCAGCTATTATTTCAAGGACTTGACTGTTTTGGAAGGTCTCACCAGCTATTAAGTGCTATCAAGAAGAACTGTGGTCAGC
AGCTATTTTTTTTAGATATTGAGATAAAAAATGAGGACAAAAAAGGGCTTGAGGTTGCTAGGCAAATTCGTCAGATAAAT
CCAGATGCGATGATTGTTTTTGTAACGACTCACTCGGAATTTATGCCCTTGGCTTTTCAGTATCAGGTATCTGCTTTGGA
CTATATCGATAAAGAGCTGCCTCACACTGAGTTTGTTCAACGGGTAGAGACTGCTTTATTATATGCTGTGCGGCAAAATA
GTGAAACGATAGCGGAAAGTGCTTTTTATTTTACATCTCGTTATGCTCAGGTACAGGTGCCTTTTAATGATATCCTGTAT
ATTGAGACATCGTCACGAGCGCATCGTGTCAATTTGTATACAAAAAAGGAGAGAATGCAATTTACAGGGACTTTGACGGA
TATTTTGAAGCAAGAGTCTCGTTTTTTGCAATGTCATCGTTCTTTTTTGATTAATCCTAGGAATGTCGTTAGGGTAGATA
AGATTGAGCGAGTGGTTTATTTTCGAAATGGCTCTAGCTGCTTAATTGCTCGTAGTAAAATGAACAGTGTTTTAACAACA
ATTGAGAACCTACATAGAGGAGATAATTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

52.209

100

0.522
  comE/comE1 Streptococcus equinus JB1

40.586

95.984

0.39
  comE/comE2 Streptococcus equinus JB1

36.29

99.598

0.361

Multiple sequence alignment