Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL47_RS01820 Genome accession   NZ_LS483328
Coordinates   353649..354137 (+) Length   162 a.a.
NCBI ID   WP_111689845.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 348649..359137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS01795 (NCTC12090_00357) - 349736..350020 (-) 285 WP_043051941.1 hypothetical protein -
  DQL47_RS01805 (NCTC12090_00359) mutY 350813..351961 (-) 1149 WP_021320373.1 A/G-specific adenine glycosylase -
  DQL47_RS01810 - 352050..352275 (+) 226 Protein_322 HicB family protein -
  DQL47_RS01815 (NCTC12090_00360) rpsF 353340..353630 (+) 291 WP_012678504.1 30S ribosomal protein S6 -
  DQL47_RS01820 (NCTC12090_00361) ssb 353649..354137 (+) 489 WP_111689845.1 single-stranded DNA-binding protein Machinery gene
  DQL47_RS01825 (NCTC12090_00362) rpsR 354297..354536 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  DQL47_RS01830 (NCTC12090_00363) - 354797..355447 (-) 651 WP_111689846.1 DUF1129 domain-containing protein -
  DQL47_RS01840 (NCTC12090_00364) - 355699..356643 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17795.63 Da        Isoelectric Point: 4.9008

>NTDB_id=1136728 DQL47_RS01820 WP_111689845.1 353649..354137(+) (ssb) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPTANSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1136728 DQL47_RS01820 WP_111689845.1 353649..354137(+) (ssb) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCACCGACAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGTAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGACATTTCAGATGACGATCTT
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377

Multiple sequence alignment