Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   XFUD_RS06985 Genome accession   NZ_CP009790
Coordinates   1497104..1497793 (+) Length   229 a.a.
NCBI ID   WP_010894039.1    Uniprot ID   Q9PD39
Organism   Xylella fastidiosa strain U24d     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1492104..1502793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFUD_RS06955 (XFUD_06490) - 1492322..1492564 (+) 243 WP_004083672.1 type B 50S ribosomal protein L31 -
  XFUD_RS06960 (XFUD_06495) - 1492792..1494081 (+) 1290 WP_010894035.1 citrate synthase -
  XFUD_RS06965 (XFUD_06500) rpsI 1494300..1494692 (-) 393 WP_010894036.1 30S ribosomal protein S9 -
  XFUD_RS06970 (XFUD_06505) rplM 1494697..1495125 (-) 429 WP_010894037.1 50S ribosomal protein L13 -
  XFUD_RS14240 - 1495140..1495274 (+) 135 WP_268233745.1 hypothetical protein -
  XFUD_RS06975 (XFUD_06510) coq7 1495346..1495999 (+) 654 WP_010894038.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  XFUD_RS06980 (XFUD_06515) speD 1496167..1496961 (-) 795 WP_004083667.1 adenosylmethionine decarboxylase -
  XFUD_RS06985 (XFUD_06520) crp 1497104..1497793 (+) 690 WP_010894039.1 cAMP-activated global transcriptional regulator CRP Regulator
  XFUD_RS13705 - 1498404..1498586 (-) 183 WP_162009299.1 hypothetical protein -
  XFUD_RS06995 (XFUD_06530) - 1499110..1499940 (-) 831 WP_010894044.1 tRNA threonylcarbamoyladenosine dehydratase -
  XFUD_RS07000 (XFUD_06535) - 1500677..1501138 (+) 462 WP_010894046.1 glycine zipper 2TM domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25555.39 Da        Isoelectric Point: 9.3942

>NTDB_id=113633 XFUD_RS06985 WP_010894039.1 1497104..1497793(+) (crp) [Xylella fastidiosa strain U24d]
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHCHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEEDHRELILGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=113633 XFUD_RS06985 WP_010894039.1 1497104..1497793(+) (crp) [Xylella fastidiosa strain U24d]
ATGACTATAGGGAACACTACGAGTGTGACAACGGTACGTAACGCTACTCCGCCTTTAGCTCTCGACAATGCGGCGATCGA
GCGCTTCTTGGCTCACTGTCATCGACGCCGCTACCCCAACCGAACGGATGTGTTTAGGCCTGGTGATCCTGCTGGAACGC
TTTACTATGTTATCAGCGGGTCGATCAGCATCATTGCCGAGGAAGAAGATCATCGTGAGCTGATTCTTGGCTATTTCGGA
GCAGGTGAGTTTGTGGGTGAGATGGGTTTATTCATCGAATCCGATGCTCGCGAAGTCATCTTACGTACCCGGACTCAGTG
TGAATTGGCTGAGGTAAGTTACGAGCGCCTGCACCAACTGTTGCAAGGCAGTTTGGCGAGTGATGCGCCGCGGATTTTGT
ATGCGATAGGCATGCAGTTATCTAAGCGTTTATTGCTTACCACCCGTAAGGCGAGTCGTCTGGCTTTTCTGGATGTGGGG
GATCGGATCTTGCGCACCTTACATGATCTGGCTCGCGATCCAGAGGCAATGAGTCATCCTCAGGGTACACAGTTGAGGGT
GTCACGTCAGGAGCTGGCGCGTCTAGTTGGATGCTCGCGTGAAATGGCTGGACGTGTGCTTAAGAAGTTGCAAGCGGATG
GACTGTTACATGCGCGCGGCAAAACCGTTGTTCTGTACGGAACGCGTTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-122)

Bacterial regulatory proteins, crp family (Crp)

(185-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PD39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

45.894

90.393

0.415
  crp Vibrio cholerae strain A1552

44.444

90.393

0.402
  crp Acinetobacter baumannii D1279779

44.608

89.083

0.397