Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   DQM44_RS07960 Genome accession   NZ_LS483318
Coordinates   1569002..1570327 (-) Length   441 a.a.
NCBI ID   WP_065354805.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564002..1575327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS07945 (NCTC5370_01634) - 1566585..1567607 (-) 1023 WP_172449184.1 IS30 family transposase -
  DQM44_RS07950 (NCTC5370_01635) raiA 1567737..1568285 (-) 549 WP_014612499.1 ribosome-associated translation inhibitor RaiA -
  DQM44_RS10770 (NCTC5370_01636) - 1568365..1569030 (-) 666 WP_012767419.1 ComF family protein -
  DQM44_RS07960 (NCTC5370_01637) comFA/cflA 1569002..1570327 (-) 1326 WP_065354805.1 DEAD/DEAH box helicase Machinery gene
  DQM44_RS07965 (NCTC5370_01638) - 1570383..1571021 (+) 639 WP_003062333.1 YigZ family protein -
  DQM44_RS07970 (NCTC5370_01639) cysK 1571125..1572060 (+) 936 WP_022555031.1 cysteine synthase A -
  DQM44_RS07975 (NCTC5370_01640) - 1572213..1572572 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  DQM44_RS07980 (NCTC5370_01641) - 1572572..1573972 (-) 1401 WP_022555032.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQM44_RS07985 (NCTC5370_01642) - 1574009..1574650 (-) 642 WP_014612503.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 49213.36 Da        Isoelectric Point: 9.7796

>NTDB_id=1136218 DQM44_RS07960 WP_065354805.1 1569002..1570327(-) (comFA/cflA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MEGIENSYGRLFLKHQLPKEVNHLAKTLESIVATKGKVTCQRCHYQITAEARLPSGTYYCRFCLVFGRNQADRPLYYIPP
HPFPIANYLQWKGILTPYQESISNQLVKNVHAKKPTLVHAVTGAGKTEMIYGAIAAVVNAGGWVCLASPRVDVCIELANR
LKAAFSCRVTLLHADSEAYQRSPIIVATTHQLLTFYKAFDLLIIDEVDAFPFVNNHQLQYAAQQAAKEGASSIVLTATST
KELEEQVKSGELEKLTLARRFHGNPLILPKFIRSFGLLKKIHCQKLPRALVKSISQQRKTGCPLLIFLPIIAMAELVTEL
LKLAFPEEQIACVSSQSADRVKDIDAFRQGKKGILVTTTILERGVTFPGVDVFVLMAQHRGYSSQSLVQIAGRVGRSIER
PTGKVYFFHDGISQAMRNARKEIKEMNQKGYLNDMPPMSTI

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=1136218 DQM44_RS07960 WP_065354805.1 1569002..1570327(-) (comFA/cflA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGGAAGGTATCGAAAACAGTTACGGTCGTTTATTTTTAAAACATCAATTGCCAAAAGAAGTAAATCATCTGGCAAAGAC
CTTGGAAAGTATAGTAGCCACAAAAGGTAAAGTCACTTGTCAACGCTGTCATTATCAGATAACCGCAGAAGCGAGATTAC
CAAGTGGCACTTACTACTGCCGCTTCTGTCTCGTTTTTGGCCGAAATCAAGCTGATAGGCCTCTTTATTATATACCTCCA
CATCCTTTTCCTATAGCCAATTATCTTCAATGGAAGGGGATATTAACGCCCTACCAAGAAAGTATTTCAAACCAATTAGT
CAAGAATGTTCATGCTAAAAAACCTACTTTAGTGCATGCTGTTACCGGAGCCGGCAAGACAGAGATGATTTATGGAGCCA
TAGCAGCAGTTGTTAATGCTGGAGGTTGGGTTTGTTTAGCCAGCCCAAGGGTCGATGTTTGTATAGAACTTGCTAATCGC
TTAAAAGCTGCTTTTTCTTGCCGGGTTACTCTTTTACATGCTGACTCAGAAGCTTATCAAAGAAGTCCTATTATAGTAGC
TACTACCCATCAATTACTGACCTTTTATAAGGCTTTTGATCTTTTAATCATTGATGAAGTTGATGCTTTTCCTTTTGTCA
ATAATCATCAACTACAATATGCAGCGCAGCAAGCCGCTAAAGAAGGCGCTAGTAGTATCGTATTGACCGCGACATCGACC
AAAGAACTGGAAGAGCAGGTCAAAAGTGGGGAACTAGAGAAGTTGACATTAGCTAGACGATTCCACGGTAATCCTTTGAT
TCTTCCGAAATTTATCAGGAGTTTTGGTCTATTAAAAAAAATTCACTGTCAAAAACTTCCTCGAGCTCTTGTTAAATCTA
TCAGTCAACAAAGGAAAACAGGATGTCCACTGCTAATTTTTCTTCCTATTATTGCCATGGCAGAATTAGTTACTGAATTA
TTAAAGTTAGCTTTTCCAGAGGAACAAATTGCCTGTGTCTCTAGCCAATCAGCTGACAGAGTTAAAGACATTGATGCCTT
TCGTCAAGGAAAGAAAGGTATTTTGGTGACCACCACAATATTGGAAAGGGGTGTTACTTTCCCAGGCGTGGATGTCTTTG
TGCTTATGGCACAGCATCGAGGATACAGTTCTCAAAGCTTGGTTCAAATCGCAGGTCGTGTGGGGAGATCTATCGAAAGG
CCAACAGGGAAGGTGTATTTCTTTCACGATGGGATTAGCCAAGCAATGCGCAATGCAAGAAAAGAAATTAAAGAAATGAA
TCAGAAAGGTTATTTGAATGATATGCCTCCTATGTCAACAATTTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(99-244)

Helicase conserved C-terminal domain (Helicase_C)

(289-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

53.538

96.145

0.515
  comFA/cflA Streptococcus pneumoniae D39

53.538

96.145

0.515
  comFA/cflA Streptococcus pneumoniae R6

53.538

96.145

0.515
  comFA/cflA Streptococcus pneumoniae TIGR4

53.538

96.145

0.515
  comFA/cflA Streptococcus mitis NCTC 12261

52.083

97.959

0.51
  comFA/cflA Streptococcus mitis SK321

52.225

96.825

0.506
  comFA Lactococcus lactis subsp. cremoris KW2

45.854

92.971

0.426
  comFA Latilactobacillus sakei subsp. sakei 23K

37.819

97.732

0.37

Multiple sequence alignment