Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM44_RS03005 Genome accession   NZ_LS483318
Coordinates   538361..539170 (+) Length   269 a.a.
NCBI ID   WP_046166040.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 533361..544170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS02980 (NCTC5370_00616) - 533735..534436 (-) 702 WP_022554363.1 amino acid ABC transporter permease -
  DQM44_RS02985 (NCTC5370_00617) - 534450..535250 (-) 801 WP_022554364.1 transporter substrate-binding domain-containing protein -
  DQM44_RS02990 (NCTC5370_00618) - 535250..536043 (-) 794 Protein_539 amino acid ABC transporter ATP-binding protein -
  DQM44_RS02995 (NCTC5370_00619) vicR 536302..537012 (+) 711 WP_012766682.1 response regulator YycF Regulator
  DQM44_RS03000 (NCTC5370_00620) vicK 537005..538357 (+) 1353 WP_022554366.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM44_RS03005 (NCTC5370_00621) vicX 538361..539170 (+) 810 WP_046166040.1 MBL fold metallo-hydrolase Regulator
  DQM44_RS03010 (NCTC5370_00622) rnc 539928..540620 (+) 693 WP_003057240.1 ribonuclease III -
  DQM44_RS03015 (NCTC5370_00623) smc 540621..544166 (+) 3546 WP_012766684.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30185.40 Da        Isoelectric Point: 6.0739

>NTDB_id=1136196 DQM44_RS03005 WP_046166040.1 538361..539170(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIRGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1136196 DQM44_RS03005 WP_046166040.1 538361..539170(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAGGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGAAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment