Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   DQM44_RS02885 Genome accession   NZ_LS483318
Coordinates   514268..515269 (+) Length   333 a.a.
NCBI ID   WP_003049927.1    Uniprot ID   A0A9X5LWR8
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 509268..520269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS02860 (NCTC5370_00590) - 509320..510246 (-) 927 WP_003053920.1 glycosyltransferase family 2 protein -
  DQM44_RS02865 (NCTC5370_00591) - 510383..511567 (-) 1185 WP_022554350.1 DNA/RNA non-specific endonuclease -
  DQM44_RS02870 (NCTC5370_00592) - 511913..512290 (-) 378 WP_022554351.1 VOC family protein -
  DQM44_RS02875 (NCTC5370_00593) - 512300..512965 (-) 666 WP_003058626.1 NAD(P)H-dependent oxidoreductase -
  DQM44_RS02880 (NCTC5370_00594) - 513009..514094 (-) 1086 WP_022554353.1 Xaa-Pro peptidase family protein -
  DQM44_RS02885 (NCTC5370_00595) ccpA 514268..515269 (+) 1002 WP_003049927.1 catabolite control protein A Regulator
  DQM44_RS02890 (NCTC5370_00596) - 515423..516886 (+) 1464 WP_111711594.1 alpha-amylase -
  DQM44_RS02895 (NCTC5370_00597) - 516963..517961 (+) 999 WP_022554355.1 glycosyltransferase -
  DQM44_RS02900 (NCTC5370_00598) - 517963..519297 (+) 1335 WP_003062487.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36683.74 Da        Isoelectric Point: 5.7248

>NTDB_id=1136193 DQM44_RS02885 WP_003049927.1 514268..515269(+) (ccpA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLDHQLPS
VNIDYKAAVSNVVDILAENHQSIAFVSGPLIDDINGKVRLAGYKEGLKHNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1136193 DQM44_RS02885 WP_003049927.1 514268..515269(+) (ccpA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGAATACAGATGATACCATCACGATTTATGACGTTGCCCGTGAAGCTGGTGTTTCTATGGCAACTGTTAGTCGTGTTGT
TAATGGCAATAAAAACGTTAAGGAAAACACGCGTAAGAAAGTTTTAGAAGTCATTGACCGCCTAGATTATCGTCCAAATG
CTGTCGCACGTGGTCTCGCCAGCAAAAAAACAACAACCGTCGGGGTTGTGATTCCGAATATTGCAAACAGTTATTTTTCT
ATTTTAGCCAAAGGTATTGATGATATCGCCGCTATGTATAAATATAATATTGTACTTGCCTCTAGTGATGAGGATGATGA
CAAGGAGGTTAACGTTGTTAATACCCTCTTTGCTAAGCAAGTTGACGGTATTATCTTTATGGGGCACCACTTGACTGAAA
AAATCCGTGCGGAATTTTCACGCTCACGCACCCCGATTGTTTTAGCAGGGACAGTTGACCTTGATCATCAATTACCAAGT
GTTAATATTGACTATAAGGCAGCTGTGTCTAATGTGGTTGATATTTTAGCAGAAAACCATCAGAGCATTGCCTTTGTGTC
AGGACCACTTATTGATGACATCAATGGTAAAGTACGTTTGGCGGGTTACAAAGAAGGCTTGAAGCACAACAAACTTGACT
TCAAAGAAGGACTTGTTTTTGAAGCTAACTATTCTTATAAAGAAGGTTTTGAATTGGCACAACGTGTGATTAACTCAGGA
GCAACAGCAGCTTATGTGGCTGAAGATGAGTTAGCAGCGGGTCTTTTAAATGGTTTGTTTGAAGCAGGCAAACGCGTTCC
AGAAGATTTTGAAATCATCACAAGCAATGATTCACCAGTTGTTCAATATACCCGTCCAAACTTGAGTTCTATCAGCCAAC
CCGTTTACGACTTGGGAGCTGTCAGCATGCGGATGTTGACAAAAATCATGAACAAAGAAGAGTTGGAAGAAAAAGAAATT
CTTTTGAATCATGGTATTAAAAAACGCGGAACCACTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.778

100

0.778

  ccpA Streptococcus pneumoniae D39

75.976

100

0.76

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment