Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DQL75_RS08185 Genome accession   NZ_LS483317
Coordinates   1623826..1624272 (-) Length   148 a.a.
NCBI ID   WP_111762333.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1618826..1629272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS08155 (NCTC5663_01551) gcvPA 1619752..1621098 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL75_RS08160 (NCTC5663_01552) gcvT 1621118..1622209 (-) 1092 WP_058343671.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL75_RS08165 - 1622368..1622892 (-) 525 WP_029549655.1 shikimate kinase -
  DQL75_RS08170 - 1622882..1623028 (-) 147 WP_001789879.1 hypothetical protein -
  DQL75_RS08175 (NCTC5663_01554) comGF 1623125..1623622 (-) 498 WP_029693246.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL75_RS08180 (NCTC5663_01555) comGE 1623540..1623839 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQL75_RS08185 (NCTC5663_01556) comGD 1623826..1624272 (-) 447 WP_111762333.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL75_RS08190 (NCTC5663_01557) comGC 1624250..1624561 (-) 312 WP_111762334.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL75_RS08195 (NCTC5663_01558) comGB 1624575..1625645 (-) 1071 WP_000776405.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL75_RS08200 (NCTC5663_01559) comGA 1625617..1626591 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL75_RS08205 (NCTC5663_01560) - 1626643..1627266 (-) 624 WP_111762335.1 MBL fold metallo-hydrolase -
  DQL75_RS08210 (NCTC5663_01561) - 1627263..1627592 (-) 330 WP_111762336.1 MTH1187 family thiamine-binding protein -
  DQL75_RS08215 (NCTC5663_01562) - 1627592..1628578 (-) 987 WP_000161315.1 ROK family glucokinase -
  DQL75_RS08220 - 1628575..1628778 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17145.38 Da        Isoelectric Point: 10.4057

>NTDB_id=1136154 DQL75_RS08185 WP_111762333.1 1623826..1624272(-) (comGD) [Staphylococcus aureus strain NCTC5663]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEAKIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1136154 DQL75_RS08185 WP_111762333.1 1623826..1624272(-) (comGD) [Staphylococcus aureus strain NCTC5663]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAAGATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment