Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   DQL75_RS08195 Genome accession   NZ_LS483317
Coordinates   1624575..1625645 (-) Length   356 a.a.
NCBI ID   WP_000776405.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619575..1630645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS08155 (NCTC5663_01551) gcvPA 1619752..1621098 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL75_RS08160 (NCTC5663_01552) gcvT 1621118..1622209 (-) 1092 WP_058343671.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL75_RS08165 - 1622368..1622892 (-) 525 WP_029549655.1 shikimate kinase -
  DQL75_RS08170 - 1622882..1623028 (-) 147 WP_001789879.1 hypothetical protein -
  DQL75_RS08175 (NCTC5663_01554) comGF 1623125..1623622 (-) 498 WP_029693246.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL75_RS08180 (NCTC5663_01555) comGE 1623540..1623839 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQL75_RS08185 (NCTC5663_01556) comGD 1623826..1624272 (-) 447 WP_111762333.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL75_RS08190 (NCTC5663_01557) comGC 1624250..1624561 (-) 312 WP_111762334.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL75_RS08195 (NCTC5663_01558) comGB 1624575..1625645 (-) 1071 WP_000776405.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL75_RS08200 (NCTC5663_01559) comGA 1625617..1626591 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL75_RS08205 (NCTC5663_01560) - 1626643..1627266 (-) 624 WP_111762335.1 MBL fold metallo-hydrolase -
  DQL75_RS08210 (NCTC5663_01561) - 1627263..1627592 (-) 330 WP_111762336.1 MTH1187 family thiamine-binding protein -
  DQL75_RS08215 (NCTC5663_01562) - 1627592..1628578 (-) 987 WP_000161315.1 ROK family glucokinase -
  DQL75_RS08220 - 1628575..1628778 (-) 204 WP_000087561.1 YqgQ family protein -
  DQL75_RS08225 (NCTC5663_01563) - 1628759..1630222 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41401.86 Da        Isoelectric Point: 10.1030

>NTDB_id=1136156 DQL75_RS08195 WP_000776405.1 1624575..1625645(-) (comGB) [Staphylococcus aureus strain NCTC5663]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGATILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1136156 DQL75_RS08195 WP_000776405.1 1624575..1625645(-) (comGB) [Staphylococcus aureus strain NCTC5663]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTTTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTGCCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAGTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCACTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTCCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992

Multiple sequence alignment