Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DQL73_RS02720 Genome accession   NZ_LS483316
Coordinates   549330..549899 (+) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13395     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 544330..554899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL73_RS02695 (NCTC13395_00500) cysE 545543..546190 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DQL73_RS02700 (NCTC13395_00501) cysS 546174..547574 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  DQL73_RS02705 (NCTC13395_00502) - 547567..547971 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  DQL73_RS02710 (NCTC13395_00503) rlmB 547979..548725 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DQL73_RS02715 (NCTC13395_00504) - 548725..549249 (+) 525 WP_000664738.1 NYN domain-containing protein -
  DQL73_RS02720 (NCTC13395_00505) sigH 549330..549899 (+) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL73_RS02725 rpmG 550014..550157 (+) 144 WP_111761263.1 50S ribosomal protein L33 -
  DQL73_RS02730 (NCTC13395_00506) secE 550213..550395 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  DQL73_RS02735 (NCTC13395_00507) nusG 550408..550956 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DQL73_RS02740 (NCTC13395_00508) rplK 551137..551559 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DQL73_RS02745 (NCTC13395_00509) rplA 551767..552459 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DQL73_RS02755 (NCTC13395_00511) rplJ 552731..553231 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DQL73_RS02760 (NCTC13395_00512) rplL 553274..553642 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DQL73_RS02765 (NCTC13395_00513) - 553817..554425 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=1136097 DQL73_RS02720 WP_061642116.1 549330..549899(+) (sigH) [Staphylococcus aureus strain NCTC13395]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1136097 DQL73_RS02720 WP_061642116.1 549330..549899(+) (sigH) [Staphylococcus aureus strain NCTC13395]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment