Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DQL83_RS08535 Genome accession   NZ_LS483311
Coordinates   1657477..1657974 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC6136     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1652477..1662974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL83_RS08510 (NCTC6136_01596) gcvPB 1652639..1654111 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  DQL83_RS08515 (NCTC6136_01597) gcvPA 1654104..1655450 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL83_RS08520 (NCTC6136_01598) gcvT 1655470..1656561 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL83_RS08525 - 1656720..1657244 (-) 525 WP_001015120.1 shikimate kinase -
  DQL83_RS08530 - 1657234..1657380 (-) 147 WP_001792109.1 hypothetical protein -
  DQL83_RS08535 (NCTC6136_01600) comGF 1657477..1657974 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL83_RS08540 (NCTC6136_01601) comGE 1657892..1658191 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQL83_RS08545 (NCTC6136_01602) comGD 1658178..1658624 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL83_RS08550 (NCTC6136_01603) comGC 1658602..1658913 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL83_RS08555 (NCTC6136_01604) comGB 1658927..1659997 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL83_RS08560 (NCTC6136_01605) comGA 1659969..1660943 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL83_RS08565 (NCTC6136_01606) - 1660995..1661618 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DQL83_RS08570 (NCTC6136_01607) - 1661615..1661944 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DQL83_RS08575 (NCTC6136_01608) - 1661944..1662930 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=1135906 DQL83_RS08535 WP_029694050.1 1657477..1657974(-) (comGF) [Staphylococcus aureus strain NCTC6136]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1135906 DQL83_RS08535 WP_029694050.1 1657477..1657974(-) (comGF) [Staphylococcus aureus strain NCTC6136]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97

Multiple sequence alignment