Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DQL85_RS07740 Genome accession   NZ_LS483308
Coordinates   1560111..1560608 (-) Length   165 a.a.
NCBI ID   WP_072353823.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13137     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555111..1565608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL85_RS07715 (NCTC13137_01451) gcvPB 1555273..1556745 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  DQL85_RS07720 (NCTC13137_01452) gcvPA 1556738..1558084 (-) 1347 WP_111743848.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL85_RS07725 (NCTC13137_01453) gcvT 1558104..1559195 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL85_RS07730 - 1559354..1559878 (-) 525 WP_001015121.1 shikimate kinase -
  DQL85_RS07735 - 1559868..1560014 (-) 147 WP_001789879.1 hypothetical protein -
  DQL85_RS07740 (NCTC13137_01455) comGF 1560111..1560608 (-) 498 WP_072353823.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL85_RS07745 (NCTC13137_01456) comGE 1560526..1560825 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQL85_RS07750 (NCTC13137_01457) comGD 1560812..1561258 (-) 447 WP_078065997.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL85_RS07755 (NCTC13137_01458) comGC 1561236..1561547 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL85_RS07760 (NCTC13137_01459) comGB 1561561..1562631 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL85_RS07765 (NCTC13137_01460) comGA 1562603..1563577 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL85_RS07770 (NCTC13137_01461) - 1563629..1564252 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DQL85_RS07775 (NCTC13137_01462) - 1564249..1564578 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DQL85_RS07780 (NCTC13137_01463) - 1564578..1565564 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19185.90 Da        Isoelectric Point: 10.2192

>NTDB_id=1135822 DQL85_RS07740 WP_072353823.1 1560111..1560608(-) (comGF) [Staphylococcus aureus strain NCTC13137]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1135822 DQL85_RS07740 WP_072353823.1 1560111..1560608(-) (comGF) [Staphylococcus aureus strain NCTC13137]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(66-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

97.576

100

0.976
  comGF Staphylococcus aureus N315

96.364

100

0.964

Multiple sequence alignment