Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   DQL85_RS07760 Genome accession   NZ_LS483308
Coordinates   1561561..1562631 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13137     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1556561..1567631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL85_RS07720 (NCTC13137_01452) gcvPA 1556738..1558084 (-) 1347 WP_111743848.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL85_RS07725 (NCTC13137_01453) gcvT 1558104..1559195 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL85_RS07730 - 1559354..1559878 (-) 525 WP_001015121.1 shikimate kinase -
  DQL85_RS07735 - 1559868..1560014 (-) 147 WP_001789879.1 hypothetical protein -
  DQL85_RS07740 (NCTC13137_01455) comGF 1560111..1560608 (-) 498 WP_072353823.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL85_RS07745 (NCTC13137_01456) comGE 1560526..1560825 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQL85_RS07750 (NCTC13137_01457) comGD 1560812..1561258 (-) 447 WP_078065997.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL85_RS07755 (NCTC13137_01458) comGC 1561236..1561547 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL85_RS07760 (NCTC13137_01459) comGB 1561561..1562631 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL85_RS07765 (NCTC13137_01460) comGA 1562603..1563577 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL85_RS07770 (NCTC13137_01461) - 1563629..1564252 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DQL85_RS07775 (NCTC13137_01462) - 1564249..1564578 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DQL85_RS07780 (NCTC13137_01463) - 1564578..1565564 (-) 987 WP_000161315.1 ROK family glucokinase -
  DQL85_RS07785 - 1565561..1565764 (-) 204 WP_000087561.1 YqgQ family protein -
  DQL85_RS07790 (NCTC13137_01464) - 1565745..1567208 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=1135826 DQL85_RS07760 WP_000776422.1 1561561..1562631(-) (comGB) [Staphylococcus aureus strain NCTC13137]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1135826 DQL85_RS07760 WP_000776422.1 1561561..1562631(-) (comGB) [Staphylococcus aureus strain NCTC13137]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATAAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1

Multiple sequence alignment