Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQL78_RS00075 | Genome accession | NZ_LS483306 |
| Coordinates | 14501..15019 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum strain NCTC12421 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 9501..20019
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL78_RS00055 (NCTC12421_00011) | gyrA | 9738..12242 (+) | 2505 | WP_016250471.1 | DNA gyrase subunit A | - |
| DQL78_RS00060 (NCTC12421_00012) | - | 12459..12830 (+) | 372 | WP_016250470.1 | MmcQ/YjbR family DNA-binding protein | - |
| DQL78_RS00065 (NCTC12421_00013) | - | 12827..13900 (+) | 1074 | WP_016250469.1 | endonuclease/exonuclease/phosphatase family protein | - |
| DQL78_RS00070 (NCTC12421_00014) | rpsF | 14159..14458 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| DQL78_RS00075 (NCTC12421_00015) | ssb | 14501..15019 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL78_RS00080 (NCTC12421_00016) | rpsR | 15049..15285 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| DQL78_RS00085 (NCTC12421_00017) | - | 15474..15887 (+) | 414 | WP_016250465.1 | NUDIX hydrolase | - |
| DQL78_RS00090 (NCTC12421_00018) | - | 15966..16238 (+) | 273 | WP_016250464.1 | NAD(P)H-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=1135706 DQL78_RS00075 WP_016250467.1 14501..15019(+) (ssb) [Enterococcus cecorum strain NCTC12421]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1135706 DQL78_RS00075 WP_016250467.1 14501..15019(+) (ssb) [Enterococcus cecorum strain NCTC12421]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |