Detailed information NTG1135559

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: DQL88_RS08525
• Genome accession: NZ_LS483301
• Coordinates: 1664043..1664489 (-)
• Length: 148 a.a.
• NCBI ID: WP_001790850.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NCTC13394
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1662114..1663286	1664043..1664489	flank	757

Gene organization within MGE regions

Location: 1662114..1664489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL88_RS08510 (NCTC13394_01581)	-	1662114..1663286 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
DQL88_RS08515 (NCTC13394_01582)	comGF	1663342..1663839 (-)	498	WP_001789864.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQL88_RS08520 (NCTC13394_01583)	comGE	1663757..1664056 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
DQL88_RS08525 (NCTC13394_01584)	comGD	1664043..1664489 (-)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17213.42 Da
• Isoelectric Point: 10.3682

>NTDB_id=1135559 DQL88_RS08525 WP_001790850.1 1664043..1664489(-) (comGD) [Staphylococcus aureus strain NCTC13394]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1135559 DQL88_RS08525 WP_001790850.1 1664043..1664489(-) (comGD) [Staphylococcus aureus strain NCTC13394]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993