Detailed information NTG1135557

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: DQL88_RS08515
• Genome accession: NZ_LS483301
• Coordinates: 1663342..1663839 (-)
• Length: 165 a.a.
• NCBI ID: WP_001789864.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NCTC13394
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1662114..1663286	1663342..1663839	flank	56

Gene organization within MGE regions

Location: 1662114..1663839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL88_RS08510 (NCTC13394_01581)	-	1662114..1663286 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
DQL88_RS08515 (NCTC13394_01582)	comGF	1663342..1663839 (-)	498	WP_001789864.1	competence type IV pilus minor pilin ComGF	Machinery gene

Sequence

Protein

• Length: 165 a.a.
• Molecular weight: 19164.88 Da
• Isoelectric Point: 10.2192

>NTDB_id=1135557 DQL88_RS08515 WP_001789864.1 1663342..1663839(-) (comGF) [Staphylococcus aureus strain NCTC13394]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide

• Length: 498 bp

>NTDB_id=1135557 DQL88_RS08515 WP_001789864.1 1663342..1663839(-) (comGF) [Staphylococcus aureus strain NCTC13394]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (67-155)

• Prokaryotic N-terminal methylation motif (N_methyl) (28-51)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Staphylococcus aureus MW2	100	100	1
comGF	Staphylococcus aureus N315	96.364	100	0.964