Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   DQL88_RS08520 Genome accession   NZ_LS483301
Coordinates   1663757..1664056 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain NCTC13394     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1662114..1663286 1663757..1664056 flank 471


Gene organization within MGE regions


Location: 1662114..1664056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL88_RS08510 (NCTC13394_01581) - 1662114..1663286 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  DQL88_RS08515 (NCTC13394_01582) comGF 1663342..1663839 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL88_RS08520 (NCTC13394_01583) comGE 1663757..1664056 (-) 300 WP_000844413.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=1135558 DQL88_RS08520 WP_000844413.1 1663757..1664056(-) (comGE) [Staphylococcus aureus strain NCTC13394]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1135558 DQL88_RS08520 WP_000844413.1 1663757..1664056(-) (comGE) [Staphylococcus aureus strain NCTC13394]
ATGAAAAGCTATAAGTGTAAAGGTTCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99

Multiple sequence alignment