Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   DQM39_RS07770 Genome accession   NZ_LS483298
Coordinates   1486151..1487152 (-) Length   333 a.a.
NCBI ID   WP_002985680.1    Uniprot ID   A0A4U7H1B9
Organism   Streptococcus pyogenes strain NCTC8225     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1481151..1492152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM39_RS07755 (NCTC8225_01559) thrS 1481321..1483264 (-) 1944 WP_002985672.1 threonine--tRNA ligase -
  DQM39_RS07760 (NCTC8225_01561) - 1483686..1485020 (-) 1335 WP_002985676.1 glycosyltransferase family 4 protein -
  DQM39_RS07765 (NCTC8225_01562) - 1485022..1486020 (-) 999 WP_002985678.1 glycosyltransferase family 4 protein -
  DQM39_RS07770 (NCTC8225_01563) ccpA 1486151..1487152 (-) 1002 WP_002985680.1 catabolite control protein A Regulator
  DQM39_RS07775 (NCTC8225_01564) - 1487326..1488411 (+) 1086 WP_002985682.1 aminopeptidase P family protein -
  DQM39_RS07780 (NCTC8225_01565) - 1488460..1489125 (+) 666 WP_002985684.1 NAD(P)H-dependent oxidoreductase -
  DQM39_RS07785 (NCTC8225_01566) - 1489136..1489513 (+) 378 WP_002985686.1 VOC family protein -
  DQM39_RS07790 (NCTC8225_01567) - 1489658..1490584 (+) 927 WP_002985688.1 glycosyltransferase family 2 protein -
  DQM39_RS07795 (NCTC8225_01568) - 1490795..1491478 (+) 684 WP_002990714.1 DUF969 domain-containing protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36713.83 Da        Isoelectric Point: 5.9985

>NTDB_id=1135484 DQM39_RS07770 WP_002985680.1 1486151..1487152(-) (ccpA) [Streptococcus pyogenes strain NCTC8225]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLDHQLPS
VNIDYRAAVSNVVDILAENHKCIAFVSGPLIDDINGKVRLAGYKEGLKHNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1135484 DQM39_RS07770 WP_002985680.1 1486151..1487152(-) (ccpA) [Streptococcus pyogenes strain NCTC8225]
ATGAATACAGATGATACCATTACAATTTATGATGTTGCCCGTGAAGCTGGTGTTTCAATGGCAACCGTTAGTCGTGTTGT
TAATGGCAATAAAAATGTTAAGGAAAATACACGTAAGAAAGTTTTAGAAGTTATTGATCGCCTTGACTATCGTCCCAATG
CTGTCGCGCGTGGTCTCGCCAGCAAAAAGACAACAACCGTTGGCGTTGTGATTCCAAATATTGCAAATAGTTATTTTTCT
ATCTTAGCTAAGGGTATTGACGATATCGCCGCTATGTACAAATATAATATTGTGCTTGCCTCCAGTGATGAAGATGATGA
CAAGGAGGTTAATGTTGTCAATACCCTTTTTGCCAAGCAAGTGGATGGTATTATTTTTATGGGGCATCACTTGACAGAAA
AAATCCGAGCCGAGTTTTCACGCTCTCGTACTCCAGTTGTTTTGGCAGGAACTGTAGATCTTGATCATCAATTACCAAGC
GTCAACATTGACTATAGAGCTGCGGTGTCAAACGTTGTTGATATTTTAGCTGAAAATCATAAGTGTATCGCTTTTGTGTC
AGGACCACTCATTGATGATATCAATGGTAAAGTGCGCTTAGCAGGTTACAAAGAAGGGTTGAAGCACAATAAGCTTGACT
TCAAAGAAGGTCTTGTTTTTGAAGCGAACTATTCTTATAAAGAAGGATTTGAATTGGCGCAGCGCGTCATTAACTCAGGA
GCAACAGCGGCTTATGTGGCTGAAGATGAATTGGCAGCAGGCCTTTTAAACGGCTTGTTTGAAGCAGGTAAACGCGTACC
AGAGGACTTTGAAATCATCACTAGCAACGATTCACCAGTGGTTCAATACACTCGTCCCAATTTGAGTTCTATCAGTCAAC
CTGTTTATGACTTAGGTGCTGTTAGCATGCGGATGTTGACTAAAATCATGAACAAAGAAGAGTTGGAAGAAAAAGAAATT
CTTTTGAATCATGGTATTAAAAAACGTGGGACAACTAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4U7H1B9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.078

100

0.781

  ccpA Streptococcus pneumoniae D39

75.375

100

0.754

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.193

99.399

0.559


Multiple sequence alignment