Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QI0055_RS00620 | Genome accession | NZ_LR999860 |
| Coordinates | 105425..105907 (+) | Length | 160 a.a. |
| NCBI ID | WP_058085720.1 | Uniprot ID | - |
| Organism | Listeria monocytogenes isolate QI0055 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 100425..110907
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QI0055_RS00570 (QI0055_117) | - | 100535..101449 (+) | 915 | WP_045553719.1 | DnaD domain-containing protein | - |
| QI0055_RS00575 (QI0055_118) | - | 101446..102258 (+) | 813 | WP_132384703.1 | DNA adenine methylase | - |
| QI0055_RS00580 (QI0055_119) | - | 102255..102887 (+) | 633 | WP_003734948.1 | DUF1642 domain-containing protein | - |
| QI0055_RS00585 (QI0055_120) | - | 102884..103405 (+) | 522 | WP_031644380.1 | YopX family protein | - |
| QI0055_RS00590 (QI0055_121) | - | 103532..103924 (+) | 393 | WP_061092564.1 | YopX family protein | - |
| QI0055_RS00595 (QI0055_122) | - | 103921..104106 (+) | 186 | WP_003727764.1 | hypothetical protein | - |
| QI0055_RS00600 (QI0055_123) | - | 104103..104393 (+) | 291 | WP_020830811.1 | hypothetical protein | - |
| QI0055_RS00605 (QI0055_125) | - | 104579..104773 (+) | 195 | WP_020830812.1 | hypothetical protein | - |
| QI0055_RS00610 (QI0055_126) | - | 104788..105015 (+) | 228 | WP_058085718.1 | ASCH/PUA domain-containing protein | - |
| QI0055_RS00615 (QI0055_127) | - | 105027..105428 (+) | 402 | WP_058085719.1 | hypothetical protein | - |
| QI0055_RS00620 (QI0055_128) | ssbA | 105425..105907 (+) | 483 | WP_058085720.1 | single-stranded DNA-binding protein | Machinery gene |
| QI0055_RS00625 (QI0055_129) | - | 105928..106119 (+) | 192 | WP_003734994.1 | hypothetical protein | - |
| QI0055_RS00630 | - | 106064..106468 (+) | 405 | WP_015987089.1 | DUF1064 domain-containing protein | - |
| QI0055_RS00635 (QI0055_131) | - | 106472..106855 (+) | 384 | WP_015987090.1 | DUF2481 family protein | - |
| QI0055_RS15525 (QI0055_132) | - | 106848..106973 (+) | 126 | WP_015987091.1 | hypothetical protein | - |
| QI0055_RS00640 (QI0055_133) | - | 106985..107149 (+) | 165 | WP_015987092.1 | hypothetical protein | - |
| QI0055_RS00645 (QI0055_134) | - | 107168..107602 (+) | 435 | WP_015987093.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| QI0055_RS00650 (QI0055_135) | - | 107963..108526 (+) | 564 | WP_134056131.1 | hypothetical protein | - |
| QI0055_RS00655 (QI0055_136) | - | 108623..108808 (+) | 186 | WP_015987095.1 | hypothetical protein | - |
| QI0055_RS00660 (QI0055_137) | - | 108850..109392 (+) | 543 | WP_015987044.1 | terminase small subunit | - |
| QI0055_RS00665 (QI0055_138) | - | 109361..110692 (+) | 1332 | WP_061092535.1 | PBSX family phage terminase large subunit | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17735.60 Da Isoelectric Point: 4.8192
>NTDB_id=1135026 QI0055_RS00620 WP_058085720.1 105425..105907(+) (ssbA) [Listeria monocytogenes isolate QI0055]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENAANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAETVQFLEPKNINAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFADEGKAIDINEDDLPF
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENAANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAETVQFLEPKNINAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFADEGKAIDINEDDLPF
Nucleotide
Download Length: 483 bp
>NTDB_id=1135026 QI0055_RS00620 WP_058085720.1 105425..105907(+) (ssbA) [Listeria monocytogenes isolate QI0055]
ATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGC
GACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TATCAACGCAGAAGGCGCTACATCGAATAATTATCAAAACCAAGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCAGATACGAGTCAGAAGAGTGATTCATTTGCAGACGAAGGCAAGGCGATTGATATTAATGAAGATGATTTGCCATTT
TGA
ATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGC
GACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TATCAACGCAGAAGGCGCTACATCGAATAATTATCAAAACCAAGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCAGATACGAGTCAGAAGAGTGATTCATTTGCAGACGAAGGCAAGGCGATTGATATTAATGAAGATGATTTGCCATTT
TGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.047 |
100 |
0.656 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.575 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
66.25 |
0.431 |