Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMG88_RS14025 Genome accession   NZ_LR882952
Coordinates   2985695..2986057 (+) Length   120 a.a.
NCBI ID   WP_026795306.1    Uniprot ID   A0A1J1JB94
Organism   Planktothrix agardhii strain No.976     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2980695..2991057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG88_RS14000 (NO976_02809) - 2981315..2982172 (+) 858 WP_042154602.1 transporter substrate-binding domain-containing protein -
  NMG88_RS14005 - 2982302..2982448 (+) 147 WP_158442898.1 hypothetical protein -
  NMG88_RS14010 (NO976_02810) - 2982450..2983016 (+) 567 WP_254035543.1 sugar O-acetyltransferase -
  NMG88_RS14015 (NO976_02811) - 2983118..2983813 (-) 696 WP_254035544.1 GDSL-type esterase/lipase family protein -
  NMG88_RS14020 (NO976_02812) - 2984171..2985406 (+) 1236 WP_026796691.1 response regulator -
  NMG88_RS14025 (NO976_02813) pilH 2985695..2986057 (+) 363 WP_026795306.1 response regulator Machinery gene
  NMG88_RS14030 (NO976_02814) - 2986074..2986598 (+) 525 WP_026788064.1 chemotaxis protein CheW -
  NMG88_RS14035 (NO976_02815) - 2986886..2990317 (+) 3432 WP_227381515.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.75 Da        Isoelectric Point: 4.7293

>NTDB_id=1132934 NMG88_RS14025 WP_026795306.1 2985695..2986057(+) (pilH) [Planktothrix agardhii strain No.976]
MNTVMVVEDSVTQREMICGLLKENGLQVSIATDGVEALEEVQKNPPDLMVLDIVMPRMNGYELCRRLKSDPKTRDIAIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPSELIGTVKQLLR

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1132934 NMG88_RS14025 WP_026795306.1 2985695..2986057(+) (pilH) [Planktothrix agardhii strain No.976]
ATGAATACAGTTATGGTTGTCGAAGATAGTGTCACTCAACGGGAGATGATTTGTGGTCTTCTCAAGGAAAATGGGTTACA
AGTCAGTATCGCCACCGACGGTGTGGAAGCACTTGAAGAAGTGCAAAAAAACCCCCCCGATTTAATGGTGCTAGATATTG
TTATGCCCAGGATGAACGGCTATGAACTCTGTCGTCGCCTAAAATCCGATCCCAAAACCCGAGATATTGCCATTGTCATG
TGTTCTTCTAAGGGGGAAGAATTTGACCGCTATTGGGGGATGAAACAGGGGGCAGATGCTTATATTGCTAAACCCTTTCA
ACCCAGTGAACTCATCGGAACCGTTAAACAGTTACTTAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J1JB94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

74.167

100

0.742
  chpA Acinetobacter baumannii strain A118

38.793

96.667

0.375
  pilG Acinetobacter baumannii strain A118

38.596

95

0.367

Multiple sequence alignment