Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | NMG72_RS20840 | Genome accession | NZ_LR882938 |
| Coordinates | 4613831..4614193 (+) | Length | 120 a.a. |
| NCBI ID | WP_026795306.1 | Uniprot ID | A0A1J1JB94 |
| Organism | Planktothrix agardhii strain No.2A | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4608831..4619193
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMG72_RS20815 (NO2A_04189) | - | 4609446..4610303 (+) | 858 | WP_042154602.1 | transporter substrate-binding domain-containing protein | - |
| NMG72_RS20820 | - | 4610433..4610579 (+) | 147 | WP_158442898.1 | hypothetical protein | - |
| NMG72_RS20825 (NO2A_04190) | - | 4610581..4611147 (+) | 567 | WP_026788060.1 | sugar O-acetyltransferase | - |
| NMG72_RS20830 (NO2A_04191) | - | 4611254..4611949 (-) | 696 | WP_026795304.1 | GDSL-type esterase/lipase family protein | - |
| NMG72_RS20835 (NO2A_04192) | - | 4612307..4613542 (+) | 1236 | WP_026796691.1 | response regulator | - |
| NMG72_RS20840 (NO2A_04193) | pilH | 4613831..4614193 (+) | 363 | WP_026795306.1 | response regulator | Machinery gene |
| NMG72_RS20845 (NO2A_04194) | - | 4614210..4614734 (+) | 525 | WP_026788064.1 | chemotaxis protein CheW | - |
| NMG72_RS20850 (NO2A_04195) | - | 4615022..4618453 (+) | 3432 | WP_254030531.1 | methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13523.75 Da Isoelectric Point: 4.7293
>NTDB_id=1132890 NMG72_RS20840 WP_026795306.1 4613831..4614193(+) (pilH) [Planktothrix agardhii strain No.2A]
MNTVMVVEDSVTQREMICGLLKENGLQVSIATDGVEALEEVQKNPPDLMVLDIVMPRMNGYELCRRLKSDPKTRDIAIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPSELIGTVKQLLR
MNTVMVVEDSVTQREMICGLLKENGLQVSIATDGVEALEEVQKNPPDLMVLDIVMPRMNGYELCRRLKSDPKTRDIAIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPSELIGTVKQLLR
Nucleotide
Download Length: 363 bp
>NTDB_id=1132890 NMG72_RS20840 WP_026795306.1 4613831..4614193(+) (pilH) [Planktothrix agardhii strain No.2A]
ATGAATACAGTTATGGTTGTCGAAGATAGTGTCACTCAACGGGAGATGATTTGTGGTCTTCTCAAGGAAAATGGGTTACA
AGTCAGTATCGCCACCGACGGTGTGGAAGCACTTGAAGAAGTGCAAAAAAACCCCCCCGATTTAATGGTGCTAGATATTG
TTATGCCCAGGATGAACGGCTATGAACTCTGTCGTCGCCTAAAATCCGATCCCAAAACCCGAGATATTGCCATTGTCATG
TGTTCTTCTAAGGGGGAAGAATTTGACCGCTATTGGGGGATGAAACAGGGGGCAGATGCTTATATTGCTAAACCCTTTCA
ACCCAGTGAACTCATCGGAACCGTTAAACAGTTACTTAGATAA
ATGAATACAGTTATGGTTGTCGAAGATAGTGTCACTCAACGGGAGATGATTTGTGGTCTTCTCAAGGAAAATGGGTTACA
AGTCAGTATCGCCACCGACGGTGTGGAAGCACTTGAAGAAGTGCAAAAAAACCCCCCCGATTTAATGGTGCTAGATATTG
TTATGCCCAGGATGAACGGCTATGAACTCTGTCGTCGCCTAAAATCCGATCCCAAAACCCGAGATATTGCCATTGTCATG
TGTTCTTCTAAGGGGGAAGAATTTGACCGCTATTGGGGGATGAAACAGGGGGCAGATGCTTATATTGCTAAACCCTTTCA
ACCCAGTGAACTCATCGGAACCGTTAAACAGTTACTTAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
74.167 |
100 |
0.742 |
| chpA | Acinetobacter baumannii strain A118 |
38.793 |
96.667 |
0.375 |
| pilG | Acinetobacter baumannii strain A118 |
38.596 |
95 |
0.367 |