Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | NMK38_RS15055 | Genome accession | NZ_LR882934 |
| Coordinates | 3255402..3255764 (+) | Length | 120 a.a. |
| NCBI ID | WP_026795306.1 | Uniprot ID | A0A1J1JB94 |
| Organism | Planktothrix agardhii strain NIVA-CYA126/8 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3250402..3260764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMK38_RS15030 (NIVACYA_03006) | - | 3251017..3251874 (+) | 858 | WP_042154602.1 | transporter substrate-binding domain-containing protein | - |
| NMK38_RS15035 | - | 3252004..3252150 (+) | 147 | WP_158442898.1 | hypothetical protein | - |
| NMK38_RS15040 (NIVACYA_03007) | - | 3252152..3252718 (+) | 567 | WP_026788060.1 | sugar O-acetyltransferase | - |
| NMK38_RS15045 (NIVACYA_03008) | - | 3252825..3253520 (-) | 696 | WP_026795304.1 | GDSL-type esterase/lipase family protein | - |
| NMK38_RS15050 (NIVACYA_03009) | - | 3253878..3255113 (+) | 1236 | WP_026796691.1 | response regulator | - |
| NMK38_RS15055 (NIVACYA_03010) | pilH | 3255402..3255764 (+) | 363 | WP_026795306.1 | response regulator transcription factor | Machinery gene |
| NMK38_RS15060 (NIVACYA_03011) | - | 3255781..3256305 (+) | 525 | WP_026788064.1 | chemotaxis protein CheW | - |
| NMK38_RS15065 (NIVACYA_03012) | - | 3256593..3260024 (+) | 3432 | WP_042154600.1 | methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13523.75 Da Isoelectric Point: 4.7293
>NTDB_id=1132870 NMK38_RS15055 WP_026795306.1 3255402..3255764(+) (pilH) [Planktothrix agardhii strain NIVA-CYA126/8]
MNTVMVVEDSVTQREMICGLLKENGLQVSIATDGVEALEEVQKNPPDLMVLDIVMPRMNGYELCRRLKSDPKTRDIAIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPSELIGTVKQLLR
MNTVMVVEDSVTQREMICGLLKENGLQVSIATDGVEALEEVQKNPPDLMVLDIVMPRMNGYELCRRLKSDPKTRDIAIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPSELIGTVKQLLR
Nucleotide
Download Length: 363 bp
>NTDB_id=1132870 NMK38_RS15055 WP_026795306.1 3255402..3255764(+) (pilH) [Planktothrix agardhii strain NIVA-CYA126/8]
ATGAATACAGTTATGGTTGTCGAAGATAGTGTCACTCAACGGGAGATGATTTGTGGTCTTCTCAAGGAAAATGGGTTACA
AGTCAGTATCGCCACCGACGGTGTGGAAGCACTTGAAGAAGTGCAAAAAAACCCCCCCGATTTAATGGTGCTAGATATTG
TTATGCCCAGGATGAACGGCTATGAACTCTGTCGTCGCCTAAAATCCGATCCCAAAACCCGAGATATTGCCATTGTCATG
TGTTCTTCTAAGGGGGAAGAATTTGACCGCTATTGGGGGATGAAACAGGGGGCAGATGCTTATATTGCTAAACCCTTTCA
ACCCAGTGAACTCATCGGAACCGTTAAACAGTTACTTAGATAA
ATGAATACAGTTATGGTTGTCGAAGATAGTGTCACTCAACGGGAGATGATTTGTGGTCTTCTCAAGGAAAATGGGTTACA
AGTCAGTATCGCCACCGACGGTGTGGAAGCACTTGAAGAAGTGCAAAAAAACCCCCCCGATTTAATGGTGCTAGATATTG
TTATGCCCAGGATGAACGGCTATGAACTCTGTCGTCGCCTAAAATCCGATCCCAAAACCCGAGATATTGCCATTGTCATG
TGTTCTTCTAAGGGGGAAGAATTTGACCGCTATTGGGGGATGAAACAGGGGGCAGATGCTTATATTGCTAAACCCTTTCA
ACCCAGTGAACTCATCGGAACCGTTAAACAGTTACTTAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
74.167 |
100 |
0.742 |
| chpA | Acinetobacter baumannii strain A118 |
38.793 |
96.667 |
0.375 |
| pilG | Acinetobacter baumannii strain A118 |
38.596 |
95 |
0.367 |