Detailed information NTG1132473

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H5027_RS04850
• Genome accession: NZ_LR861807
• Coordinates: 1166996..1168390 (-)
• Length: 464 a.a.
• NCBI ID: WP_047127086.1
• Uniprot ID: A0A7U7HJH5
• Organism: Xanthomonas arboricola pv. juglandis isolate 3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1161996..1173390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5027_RS04835 (XSP_000967)	-	1162705..1163274 (+)	570	WP_231103946.1	hypothetical protein	-
H5027_RS04840 (XSP_000968)	-	1163244..1164770 (+)	1527	WP_053051304.1	hypothetical protein	-
H5027_RS04845 (XSP_000969)	pilB	1164805..1166541 (+)	1737	WP_053051303.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H5027_RS04850 (XSP_000970)	pilR	1166996..1168390 (-)	1395	WP_047127086.1	sigma-54 dependent transcriptional regulator	Regulator
H5027_RS04855 (XSP_000971)	-	1168581..1170194 (-)	1614	WP_039512337.1	HAMP domain-containing sensor histidine kinase	-
H5027_RS04860 (XSP_000972)	sucC	1170426..1171595 (+)	1170	WP_016901264.1	ADP-forming succinate--CoA ligase subunit beta	-
H5027_RS04865 (XSP_000973)	sucD	1171620..1172495 (+)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50190.57 Da
• Isoelectric Point: 6.5112

>NTDB_id=1132473 H5027_RS04850 WP_047127086.1 1166996..1168390(-) (pilR) [Xanthomonas arboricola pv. juglandis isolate 3]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1132473 H5027_RS04850 WP_047127086.1 1166996..1168390(-) (pilR) [Xanthomonas arboricola pv. juglandis isolate 3]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTGGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTAGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAACCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAAAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTATGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAGGAGAATCGCTGGAACAAAACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491