Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H7A87_RS14975 Genome accession   NZ_LR861805
Coordinates   3522781..3524175 (+) Length   464 a.a.
NCBI ID   WP_180496733.1    Uniprot ID   A0AA46HAZ5
Organism   Xanthomonas sp. CPBF 426 isolate     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517781..3529175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A87_RS14955 (XSP_003004) - 3518284..3518601 (+) 318 WP_147421062.1 hypothetical protein -
  H7A87_RS14960 (XSP_003005) sucD 3518683..3519558 (-) 876 WP_047124757.1 succinate--CoA ligase subunit alpha -
  H7A87_RS14965 (XSP_003006) sucC 3519583..3520752 (-) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  H7A87_RS14970 (XSP_003007) - 3520975..3522588 (+) 1614 WP_104544483.1 HAMP domain-containing sensor histidine kinase -
  H7A87_RS14975 (XSP_003008) pilR 3522781..3524175 (+) 1395 WP_180496733.1 sigma-54 dependent transcriptional regulator Regulator
  H7A87_RS14980 (XSP_003009) pilB 3524474..3526210 (-) 1737 WP_119127591.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7A87_RS14985 (XSP_003010) galE 3526330..3527307 (-) 978 WP_119127589.1 UDP-glucose 4-epimerase GalE -
  H7A87_RS14990 (XSP_003011) - 3527403..3528947 (-) 1545 WP_119127587.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50206.62 Da        Isoelectric Point: 6.6444

>NTDB_id=1132458 H7A87_RS14975 WP_180496733.1 3522781..3524175(+) (pilR) [Xanthomonas sp. CPBF 426 isolate]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDRYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1132458 H7A87_RS14975 WP_180496733.1 3522781..3524175(+) (pilR) [Xanthomonas sp. CPBF 426 isolate]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGAAGCATGGACCTGGCGGTGGAGGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCGGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGCGCGATGGAAAGCTTGCGCGCCACCATCGGCAAGGTGGCGCGT
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
CCGCGCGGCCGGTCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCTGGAC
GAAGTAGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCAATCCAGGAAAAATCGGTGCGCCCGGTCGGTGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAGCTGGCCGCGGCGATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCGATACCGCTACTGACCCAGTCCGCGCTCGA
TGCGCTGGACCGGTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCG
GTAGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGCTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

48.707

100

0.487

Multiple sequence alignment