Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1W81_RS02595 Genome accession   NZ_LR824002
Coordinates   475232..475750 (+) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus isolate STH_CIRM_67     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 470232..480750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W81_RS02565 (STHERMO_0539) - 470701..471045 (+) 345 WP_011226553.1 hypothetical protein -
  H1W81_RS02570 (STHERMO_0540) - 471048..471260 (+) 213 WP_011226552.1 hypothetical protein -
  H1W81_RS02575 (STHERMO_0541) - 471363..471614 (+) 252 WP_011226551.1 hypothetical protein -
  H1W81_RS02580 (STHERMO_0545) mutY 471941..473092 (-) 1152 WP_011226550.1 A/G-specific adenine glycosylase -
  H1W81_RS09385 (STHERMO_0546) - 473757..474341 (-) 585 WP_011226549.1 hypothetical protein -
  H1W81_RS09390 (STHERMO_0547) - 474379..474711 (-) 333 WP_011226548.1 hypothetical protein -
  H1W81_RS02590 (STHERMO_0548) rpsF 474930..475220 (+) 291 WP_002951906.1 30S ribosomal protein S6 -
  H1W81_RS02595 (STHERMO_0549) ssb 475232..475750 (+) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  H1W81_RS02600 (STHERMO_0550) rpsR 475792..476031 (+) 240 WP_002945024.1 30S ribosomal protein S18 -
  H1W81_RS02605 (STHERMO_0551) - 476158..477039 (-) 882 WP_011226547.1 DUF4300 family protein -
  H1W81_RS02610 (STHERMO_0552) - 477156..477827 (-) 672 WP_011226546.1 DUF1129 domain-containing protein -
  H1W81_RS02615 (STHERMO_0553) - 477898..478842 (-) 945 WP_002951901.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=1132325 H1W81_RS02595 WP_002951905.1 475232..475750(+) (ssb) [Streptococcus thermophilus isolate STH_CIRM_67]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1132325 H1W81_RS02595 WP_002951905.1 475232..475750(+) (ssb) [Streptococcus thermophilus isolate STH_CIRM_67]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTAGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment