Detailed information NTG0113199

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: SAGV69_RS03975
• Genome accession: NZ_CP009681
• Coordinates: 765670..766272 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain Gv69
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 760670..771272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAGV69_RS03935	-	760735..760854 (+)	120	WP_000840602.1	hypothetical protein	-
SAGV69_RS03940 (SAGV69_00790)	mreC	761054..761896 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
SAGV69_RS03945 (SAGV69_00791)	mreD	761896..762444 (+)	549	WP_042857056.1	rod shape-determining protein MreD	-
SAGV69_RS03950 (SAGV69_00792)	rplU	762611..762919 (+)	309	WP_000457385.1	50S ribosomal protein L21	-
SAGV69_RS03955 (SAGV69_00793)	-	762925..763245 (+)	321	WP_016187883.1	ribosomal-processing cysteine protease Prp	-
SAGV69_RS03960 (SAGV69_00794)	rpmA	763257..763541 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
SAGV69_RS03965 (SAGV69_00796)	obgE	763896..765188 (+)	1293	WP_020444729.1	GTPase ObgE	-
SAGV69_RS03970 (SAGV69_00797)	-	765201..765656 (+)	456	WP_000368902.1	ACT domain-containing protein	-
SAGV69_RS03975 (SAGV69_00798)	ruvA	765670..766272 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
SAGV69_RS03980 (SAGV69_00799)	ruvB	766304..767308 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SAGV69_RS03985 (SAGV69_00800)	queA	767310..768335 (+)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
SAGV69_RS03990 (SAGV69_00801)	tgt	768358..769497 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
SAGV69_RS03995 (SAGV69_04190)	yajC	769516..769776 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=113199 SAGV69_RS03975 WP_000271547.1 765670..766272(+) (ruvA) [Staphylococcus aureus strain Gv69]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=113199 SAGV69_RS03975 WP_000271547.1 765670..766272(+) (ruvA) [Staphylococcus aureus strain Gv69]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425