Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1W92_RS08220 Genome accession   NZ_LR822039
Coordinates   1574401..1574919 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus isolate STH_CIRM_1116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1569401..1579919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W92_RS08200 (STHERMO_1805) - 1571309..1572253 (+) 945 WP_011227550.1 magnesium transporter CorA family protein -
  H1W92_RS08205 (STHERMO_1806) - 1572324..1572995 (+) 672 WP_011227551.1 DUF1129 domain-containing protein -
  H1W92_RS08210 (STHERMO_1807) - 1573112..1573993 (+) 882 WP_011227552.1 DUF4300 family protein -
  H1W92_RS08215 (STHERMO_1808) rpsR 1574120..1574359 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  H1W92_RS08220 (STHERMO_1809) ssb 1574401..1574919 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  H1W92_RS08225 (STHERMO_1810) rpsF 1574931..1575221 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  H1W92_RS09985 (STHERMO_1811) - 1575440..1575772 (+) 333 WP_011226548.1 hypothetical protein -
  H1W92_RS09990 (STHERMO_1812) - 1575933..1576394 (+) 462 WP_231108733.1 hypothetical protein -
  H1W92_RS08235 (STHERMO_1814) mutY 1577059..1578210 (+) 1152 WP_011226550.1 A/G-specific adenine glycosylase -
  H1W92_RS08240 (STHERMO_1817) - 1578537..1578788 (-) 252 WP_011227553.1 hypothetical protein -
  H1W92_RS08245 (STHERMO_1818) - 1578891..1579103 (-) 213 WP_011226552.1 hypothetical protein -
  H1W92_RS08250 (STHERMO_1819) - 1579106..1579420 (-) 315 WP_231108732.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=1131960 H1W92_RS08220 WP_002951905.1 1574401..1574919(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_1116]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1131960 H1W92_RS08220 WP_002951905.1 1574401..1574919(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_1116]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAGCTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment