Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H1X38_RS08280 Genome accession   NZ_LR822035
Coordinates   1613066..1613584 (-) Length   172 a.a.
NCBI ID   WP_014727695.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1608066..1618584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X38_RS08260 (STHERMO_1853) - 1609975..1610919 (+) 945 WP_014727694.1 magnesium transporter CorA family protein -
  H1X38_RS08265 (STHERMO_1854) - 1610989..1611660 (+) 672 WP_011227551.1 DUF1129 domain-containing protein -
  H1X38_RS08270 (STHERMO_1855) - 1611777..1612658 (+) 882 WP_011681623.1 DUF4300 family protein -
  H1X38_RS08275 (STHERMO_1856) rpsR 1612785..1613024 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  H1X38_RS08280 (STHERMO_1857) ssb 1613066..1613584 (-) 519 WP_014727695.1 single-stranded DNA-binding protein Machinery gene
  H1X38_RS08285 (STHERMO_1858) rpsF 1613596..1613886 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  H1X38_RS08290 (STHERMO_1859) - 1614105..1615058 (+) 954 WP_011681625.1 hypothetical protein -
  H1X38_RS08295 (STHERMO_1861) mutY 1615844..1616995 (+) 1152 WP_014727697.1 A/G-specific adenine glycosylase -
  H1X38_RS08300 (STHERMO_1864) - 1617322..1617573 (-) 252 WP_041829329.1 hypothetical protein -
  H1X38_RS08305 (STHERMO_1865) - 1617746..1617907 (-) 162 WP_014727699.1 hypothetical protein -
  H1X38_RS08310 (STHERMO_1866) - 1617894..1618208 (-) 315 WP_014727700.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18650.38 Da        Isoelectric Point: 4.7482

>NTDB_id=1131785 H1X38_RS08280 WP_014727695.1 1613066..1613584(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_1051]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASAGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1131785 H1X38_RS08280 WP_014727695.1 1613066..1613584(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAGCTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCG
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment