Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   H1W90_RS00740 Genome accession   NZ_LR822033
Coordinates   130543..132516 (+) Length   657 a.a.
NCBI ID   WP_180481165.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 132886..136806 130543..132516 flank 370


Gene organization within MGE regions


Location: 130543..136806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS00740 (STHERMO_0138) amiA3 130543..132516 (+) 1974 WP_180481165.1 peptide ABC transporter substrate-binding protein Regulator
  H1W90_RS00745 (STHERMO_0139) - 132561..133374 (-) 814 Protein_107 ISL3 family transposase -
  H1W90_RS00750 (STHERMO_0140) - 133667..133888 (+) 222 WP_002948904.1 DUF4649 family protein -
  H1W90_RS00755 - 133973..134295 (-) 323 Protein_109 transposase -
  H1W90_RS00760 (STHERMO_0142) - 134484..134810 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  H1W90_RS00765 (STHERMO_0143) - 134892..136082 (+) 1191 WP_002949216.1 SAM-dependent methyltransferase -
  H1W90_RS00770 (STHERMO_0145) - 136342..136806 (-) 465 Protein_112 transposase family protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72313.37 Da        Isoelectric Point: 5.1005

>NTDB_id=1131618 H1W90_RS00740 WP_180481165.1 130543..132516(+) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_1048]
MKLKKILGITGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYTNVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDEYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIYYTAPGASTSAIGINLDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVDQSSKLNVAQVQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATLNAANAAAEDWDISNSVAWAPDYQDPSTYLDIFKTTSSENTKAFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASLQVGDKNSSNDYIKYVKPQEKVVTKKEYEQSREKWLKE
KKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=1131618 H1W90_RS00740 WP_180481165.1 130543..132516(+) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGAAACTTAAAAAAATTCTTGGAATTACGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACACTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGAGTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATCTTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGCTCTAAACTTAATGTTGCCCAAGTCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGCTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCCTCCAGGTGGGTGATAAAAACTCATCAAACGACT
ACATCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAA
AAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

98.478

100

0.985
  amiA3 Streptococcus thermophilus LMD-9

97.869

100

0.979
  amiA Streptococcus salivarius strain HSISS4

89.65

100

0.897

Multiple sequence alignment