Detailed information NTG1131306

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H1W98_RS09640
• Genome accession: NZ_LR822026
• Coordinates: 1875502..1875939 (-)
• Length: 145 a.a.
• NCBI ID: WP_179972343.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_967
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1870502..1880939

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W98_RS09615 (STHERMO_2198)	-	1871300..1871962 (-)	663	WP_179972338.1	CPBP family intramembrane glutamic endopeptidase	-
H1W98_RS11415 (STHERMO_2200)	-	1872059..1872500 (-)	442	Protein_1850	CAAX protease	-
H1W98_RS09620 (STHERMO_2201)	-	1872512..1872709 (-)	198	WP_179972339.1	helix-turn-helix transcriptional regulator	-
H1W98_RS09625 (STHERMO_2202)	-	1872957..1874150 (-)	1194	WP_179972340.1	acetate kinase	-
H1W98_RS09630 (STHERMO_2203)	comYH	1874206..1875162 (-)	957	WP_179972341.1	class I SAM-dependent methyltransferase	Machinery gene
H1W98_RS09635 (STHERMO_2204)	comGG	1875213..1875524 (-)	312	WP_179972342.1	competence type IV pilus minor pilin ComGG	-
H1W98_RS09640 (STHERMO_2205)	comYF	1875502..1875939 (-)	438	WP_179972343.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1W98_RS09645 (STHERMO_2206)	comGE	1875923..1876216 (-)	294	WP_179972344.1	competence type IV pilus minor pilin ComGE	-
H1W98_RS09650 (STHERMO_2207)	comGD	1876188..1876616 (-)	429	WP_269473123.1	competence type IV pilus minor pilin ComGD	-
H1W98_RS09655 (STHERMO_2208)	comYC	1876576..1876902 (-)	327	WP_179972346.1	competence type IV pilus major pilin ComGC	Machinery gene
H1W98_RS09660 (STHERMO_2209)	comYB	1876899..1877999 (-)	1101	WP_179973355.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1W98_RS09665 (STHERMO_2210)	comGA/cglA/cilD	1877881..1878822 (-)	942	WP_179972347.1	competence type IV pilus ATPase ComGA	Machinery gene
H1W98_RS09670 (STHERMO_2211)	-	1878903..1879265 (-)	363	WP_180482294.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16330.76 Da
• Isoelectric Point: 8.4525

>NTDB_id=1131306 H1W98_RS09640 WP_179972343.1 1875502..1875939(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_967]
MYLSSNLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNGLQRNFIYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1131306 H1W98_RS09640 WP_179972343.1 1875502..1875939(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGTATCTAAGCAGTAATCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAATAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGGACTAC
AAAGGAATTTTATTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.447	97.241	0.559
comYF	Streptococcus mutans UA159	56.738	97.241	0.552
comGF/cglF	Streptococcus pneumoniae D39	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae Rx1	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae R6	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae TIGR4	50	96.552	0.483
comGF/cglF	Streptococcus mitis NCTC 12261	48.227	97.241	0.469
comGF/cglF	Streptococcus mitis SK321	47.518	97.241	0.462
comGF	Lactococcus lactis subsp. cremoris KW2	46.377	95.172	0.441